Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010000990.1:149230-151360[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 10 0.00064 0.043 14.8 1.6 2 23 280 302 280 302 0.95

2 10 3.2e-05 0.0021 18.9 5.3 1 23 308 330 308 330 0.99

3 10 0.0027 0.18 12.8 1.4 1 23 336 358 336 358 0.97

4 10 4.5e-06 0.00031 21.5 3.3 3 23 366 386 364 386 0.96

5 10 0.00038 0.025 15.5 3.9 1 23 392 414 392 414 0.98

6 10 0.00022 0.015 16.2 1.1 1 23 420 442 420 442 0.98

7 10 0.0028 0.19 12.8 5.6 1 23 448 470 448 470 0.98

8 10 1.9e-06 0.00013 22.7 1.4 1 23 476 498 476 498 0.99

9 10 1.9e-05 0.0013 19.6 3.4 1 23 504 526 504 526 0.98

10 10 2.3e-05 0.0015 19.3 2.8 1 23 532 555 532 555 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	10	0.00064	0.043	14.8	1.6	2	23	280	302	280	302	0.95
2	10	3.2e-05	0.0021	18.9	5.3	1	23	308	330	308	330	0.99
3	10	0.0027	0.18	12.8	1.4	1	23	336	358	336	358	0.97
4	10	4.5e-06	0.00031	21.5	3.3	3	23	366	386	364	386	0.96
5	10	0.00038	0.025	15.5	3.9	1	23	392	414	392	414	0.98
6	10	0.00022	0.015	16.2	1.1	1	23	420	442	420	442	0.98
7	10	0.0028	0.19	12.8	5.6	1	23	448	470	448	470	0.98
8	10	1.9e-06	0.00013	22.7	1.4	1	23	476	498	476	498	0.99
9	10	1.9e-05	0.0013	19.6	3.4	1	23	504	526	504	526	0.98
10	10	2.3e-05	0.0015	19.3	2.8	1	23	532	555	532	555	0.97

Sequence Information

Coding Sequence: ATGGATTCTATAACTCTACTAAAAACCTGTTTAGCTTGTTTTAACAAATCCTACGAAATGCATCACCTCCAAGACATTCTCACAGAAGACTTGAAAATATTGGAAATACTTTACAAACTAGTACCTTCATTAATGGAAGACCATGACTTTAGTCTGCCGGAATGGTTATGCGCCCAATGTTTGAAGCACCTAAAAATAGCTTACCGTTTTCAAAAGCAATGTTTGAATTCTATAGAGTATTTACGTAAATTACACGCAGGCAACAGTTTGAAAGAAGAACAAAATGCAGAAATTAATAAAGAGGAAGATAGTGTGGGTAAAAATGAAATCACGAGTGGCGAGGAAGTTTCGAGGTACTATCTGAATGACTGCAGTCCGGAAGAAATTATGTCATATAAAGGAATTGAAATAAATTCACCAAAAGAAATTACAAATAACATTAAACCATTCGAAGAGATAGTACTTAAACAAAAATATTCTGATATGATTGAATATAACGAAGATCTTAAAACATTTGATGAGCTAGAAGAGAGTCCGGACTTAGTCTCAAACAAGAAACCTAATCGGAGATTATACAGACGAACAAAACCACCTAAAATCCAGCACTCAAGACACAAGAAAGAAAAGTCTAAAAGAATTCGATTAAAAAACAATAATGAAACTATAGAAAATTCGGACCTTCTAACGGATGATTCGAACATATCACAGCACAAAAATGAAAAGGCATTGGAAATGCCATTAACAATCAAAATCGAAACTGCAAATGATGATGTTAAGGGACACAATATTCTAACAACAAACAACAATGAGGAAGTTATGGCCACATCATCATCAAATTCCTGTAATTTATGTGATCAAACATTTAAAACTAAGCAAGGACTAGCAATGCATCGAAGTAAGACGCATTTTAAGAAATATCCATACAAATGCGATAAATGTAATAAAGGATTCAATAGCGAGGATCATTATACGAAACATTACAATAGACATTTGGGTATAAAAACATTCAAGTGCAATCAATGTGATAAAGCTTTCCATGCTAATAGTATTTTAAATCAACATTTAATCAGTCATTCCAAGGAGGCACCTCATTTATGTAACATCTGTGGTAAAAGTTTTAGGCGCATCGATAGTTTAAGGCAGCACACAAAACGTCATTCAGACGAAAGGCCCTTTCAGTGCTCTGTGTGTCCGAAACGCTTTAAGTGTCGTTCGGATTATAACAATCATATGGTAACGCATGAAACTCAAAAGCGCCATGAATGCGAGATATGCGGTGTACGTTTGGCCAGCTCCGAATCTTTGACACATCATAAACGTGTACACTCGGGTGAGAAGCCATACAAATGTAGATTCTGTGACAAAAGCTTTAGCTGTTCTTCCAACATGAAGAGCCATGAAAAAATTCATACCGGCGAAAAGCCTTATAAATGTCCTTATTGCCCAAAGAGTTTTCGCCAAAGTACCAGTCGTGTTAAACATCTTAATGTTCACACAAATGAGAGAGCCTTCAAGTGTAGATTTTGTGGTAAAAGCTTCAACCATGCCTCTAATGTAAGAAGTCATGAGAAAATTCATACCGGCGAGAGACCTTATAAATGCTCCTATTGTGAAAAAACCTTTCGAGAAAGTTCAACTCGTACGAGACATATTAAAAATATACATCAAAAGGAATTAAATAACAAAAAGCTGGAGGTGTTAAGTGAAGAAATTAAATCATCTTAA
Protein Sequence: MDSITLLKTCLACFNKSYEMHHLQDILTEDLKILEILYKLVPSLMEDHDFSLPEWLCAQCLKHLKIAYRFQKQCLNSIEYLRKLHAGNSLKEEQNAEINKEEDSVGKNEITSGEEVSRYYLNDCSPEEIMSYKGIEINSPKEITNNIKPFEEIVLKQKYSDMIEYNEDLKTFDELEESPDLVSNKKPNRRLYRRTKPPKIQHSRHKKEKSKRIRLKNNNETIENSDLLTDDSNISQHKNEKALEMPLTIKIETANDDVKGHNILTTNNNEEVMATSSSNSCNLCDQTFKTKQGLAMHRSKTHFKKYPYKCDKCNKGFNSEDHYTKHYNRHLGIKTFKCNQCDKAFHANSILNQHLISHSKEAPHLCNICGKSFRRIDSLRQHTKRHSDERPFQCSVCPKRFKCRSDYNNHMVTHETQKRHECEICGVRLASSESLTHHKRVHSGEKPYKCRFCDKSFSCSSNMKSHEKIHTGEKPYKCPYCPKSFRQSTSRVKHLNVHTNERAFKCRFCGKSFNHASNVRSHEKIHTGERPYKCSYCEKTFRESSTRTRHIKNIHQKELNNKKLEVLSEEIKSS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -