Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010000192.1:40093-41969[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.00029 0.019 15.9 2.6 2 23 9 31 8 31 0.95

2 14 1.2e-05 0.00078 20.3 2.3 1 23 37 60 37 60 0.97

3 14 0.0019 0.13 13.3 0.7 2 23 72 94 71 94 0.97

4 14 3.5e-05 0.0023 18.8 2.3 2 23 181 202 180 202 0.96

5 14 0.0038 0.26 12.3 3.7 1 21 208 228 208 230 0.89

6 14 0.0075 0.51 11.4 0.2 1 21 243 263 243 264 0.92

7 14 0.091 6.2 8.0 4.4 1 20 273 292 273 294 0.94

8 14 0.48 32 5.7 0.2 1 23 323 345 323 345 0.95

9 14 0.00019 0.013 16.5 5.5 1 23 351 373 351 373 0.99

10 14 0.0015 0.1 13.6 6.8 1 23 379 401 379 401 0.99

11 14 5.6e-06 0.00038 21.3 3.7 1 23 456 479 456 479 0.96

12 14 0.00095 0.064 14.2 3.7 1 23 485 507 485 507 0.98

13 14 3.1e-05 0.0021 18.9 0.8 1 23 514 536 514 536 0.98

14 14 7e-05 0.0047 17.8 4.4 1 23 542 565 542 565 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.00029	0.019	15.9	2.6	2	23	9	31	8	31	0.95
2	14	1.2e-05	0.00078	20.3	2.3	1	23	37	60	37	60	0.97
3	14	0.0019	0.13	13.3	0.7	2	23	72	94	71	94	0.97
4	14	3.5e-05	0.0023	18.8	2.3	2	23	181	202	180	202	0.96
5	14	0.0038	0.26	12.3	3.7	1	21	208	228	208	230	0.89
6	14	0.0075	0.51	11.4	0.2	1	21	243	263	243	264	0.92
7	14	0.091	6.2	8.0	4.4	1	20	273	292	273	294	0.94
8	14	0.48	32	5.7	0.2	1	23	323	345	323	345	0.95
9	14	0.00019	0.013	16.5	5.5	1	23	351	373	351	373	0.99
10	14	0.0015	0.1	13.6	6.8	1	23	379	401	379	401	0.99
11	14	5.6e-06	0.00038	21.3	3.7	1	23	456	479	456	479	0.96
12	14	0.00095	0.064	14.2	3.7	1	23	485	507	485	507	0.98
13	14	3.1e-05	0.0021	18.9	0.8	1	23	514	536	514	536	0.98
14	14	7e-05	0.0047	17.8	4.4	1	23	542	565	542	565	0.95

Sequence Information

Coding Sequence: ATGGAGACTTCTTTATCCAACATTAAATGTGAATTGTGTCACAAAAGCTTCTCACAAATTTCCTCACGCAACCGTCATGTTCGGGAGCAACATACAAAACCTGGTTTATATCAATGTAAAGAATGTGGATCAAGGTTCAGCAAAAAATTTAATCTACAAATCCATTTAAAGCAATCACACACCAAAAATACAAAAACCAAGGGCAAACAGAACAAATGTTCCCAGTGCCCAGAAGTATTTCCAAATATTTTAACCTTAAAAAAACACACGCAAAGGCAACATTCTAATGACACTACACTGGAGGGTAGTTATCAAGAAACCAGTGCTCAAGCTCTAGCCAAGACGGTGTTAAAAGAACTAAAGCAATTGCAGCAAGAAATAGAATCTGCTAAGGAACATTTCAGTATTTTACCAGAATTTACTGACATTGAAAAATCCATTGTAAGGGATATAACCATAAAAGATAATTTATATCCCTTGGGACATTTTACACTAATAAAAATAAAAGCAATTAAACGTGGAAACAAGCAGACGTTTCTGATATGCGAATTCTGTAGTAAAGAATTTCGAAAAACTTATAATTTGTTAAGGCACCGAAGAACTCACACTAAAGTAAGACCATTTATATGTGTTTTATGTAAAAAATCTTTTGCCACTGCAAACCATTTGAAAACTCATTGTTCCATACATAAACTCAATGAAGACTTAGGACTTTTCCATAGATTATATAAATGTCCAAAATGTAATGAAGGTTTTAGTTCAATTTTACAAATCGATAAGCATTTAAGATCATCTGAAAGCTGCCGCCATATATGTTTTAAGTGTCCCAAGTGTTTCAGATTCTTTAGAACCTTCAGAAGACTTATGAGCCATAAACATTTGGAAAATGATAATGAATTAGATATACTCAAGACAATTTTACCCACTCCCTTGGTTAAAACCGAAAATAATGGTGAAATGACATTATATGAGTGCAATTTATGTGGTTTACAAATGCAAAGCAAGATTATGCTAGTTCTTCATGAAAAGAGACATTCAAATTTGTACAAATATCAATGCACAGAATGTCATCATTCCTATAACACTCAAACAGCTTTAAAGATCCACACAAAATCTCATATACAGCAAGGAATCTTTAAATGTCAGTATTGTACAAAAACTTTTACAACAGTACAAAATTGTCGTCAACATATGATGAGACATTTAAAGAAGTTAATTAAAACCCAGGAAGCTTCAAAGGAAAACAATGATATCTTGTGTAAATATCCAACTTTTATAGATAACAAGGAAACCAGCGAAACTGTTATCATTAAACCATCTAAACAAATTAAAATTGCAAATGAAAAGAGTTTAAGTGATTTTAAATACAAATGTCCCAAATGTGATAAGTCCTTTCGTTTTAATGCCTGGCTTAAAAAGCATTTTAAATATAAACACATCTCAGATTTATCTTTTGAATGCAATCAATGTTCCAAAACGTTTTGTACCAAACAAATTTTAAAAGATCATCTGATAACGCATTCACCACAGCGCATGAAATTTACCTGTCAAGTTTGTGGACGTCAGTACGCCTCTACAAAATCCTTAAAACTGCACCTAAGAATACATACACAAGAGAAGCCTTTTAAATGCGACGAGTGCTTTAAAAACTTTCGAACTTCTGGTCATTTGAAACAACACAAAACATCGATTCATAGAAAATAA
Protein Sequence: METSLSNIKCELCHKSFSQISSRNRHVREQHTKPGLYQCKECGSRFSKKFNLQIHLKQSHTKNTKTKGKQNKCSQCPEVFPNILTLKKHTQRQHSNDTTLEGSYQETSAQALAKTVLKELKQLQQEIESAKEHFSILPEFTDIEKSIVRDITIKDNLYPLGHFTLIKIKAIKRGNKQTFLICEFCSKEFRKTYNLLRHRRTHTKVRPFICVLCKKSFATANHLKTHCSIHKLNEDLGLFHRLYKCPKCNEGFSSILQIDKHLRSSESCRHICFKCPKCFRFFRTFRRLMSHKHLENDNELDILKTILPTPLVKTENNGEMTLYECNLCGLQMQSKIMLVLHEKRHSNLYKYQCTECHHSYNTQTALKIHTKSHIQQGIFKCQYCTKTFTTVQNCRQHMMRHLKKLIKTQEASKENNDILCKYPTFIDNKETSETVIIKPSKQIKIANEKSLSDFKYKCPKCDKSFRFNAWLKKHFKYKHISDLSFECNQCSKTFCTKQILKDHLITHSPQRMKFTCQVCGRQYASTKSLKLHLRIHTQEKPFKCDECFKNFRTSGHLKQHKTSIHRK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -