Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010003692.1:179894-184145[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 5.2 3.5e+02 2.5 0.3 1 15 120 134 120 137 0.83

2 12 0.052 3.5 8.8 0.4 1 19 220 238 220 238 0.94

3 12 0.00036 0.024 15.6 2.0 1 23 270 292 270 292 0.98

4 12 7e-06 0.00048 20.9 0.2 2 23 311 332 310 332 0.97

5 12 0.00054 0.036 15.0 1.1 1 23 358 379 358 379 0.96

6 12 0.00015 0.01 16.7 0.5 1 23 385 407 385 407 0.98

7 12 0.00047 0.031 15.2 1.3 1 23 448 470 448 470 0.96

8 12 9e-08 6.1e-06 26.9 0.6 1 23 476 498 476 498 0.99

9 12 0.00013 0.0087 17.0 3.5 1 23 504 526 504 526 0.99

10 12 6.2e-07 4.2e-05 24.3 0.4 1 23 532 554 532 554 0.98

11 12 4.6e-05 0.0031 18.4 0.5 1 23 558 580 558 580 0.98

12 12 0.19 13 7.0 0.2 2 23 593 615 593 615 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	5.2	3.5e+02	2.5	0.3	1	15	120	134	120	137	0.83
2	12	0.052	3.5	8.8	0.4	1	19	220	238	220	238	0.94
3	12	0.00036	0.024	15.6	2.0	1	23	270	292	270	292	0.98
4	12	7e-06	0.00048	20.9	0.2	2	23	311	332	310	332	0.97
5	12	0.00054	0.036	15.0	1.1	1	23	358	379	358	379	0.96
6	12	0.00015	0.01	16.7	0.5	1	23	385	407	385	407	0.98
7	12	0.00047	0.031	15.2	1.3	1	23	448	470	448	470	0.96
8	12	9e-08	6.1e-06	26.9	0.6	1	23	476	498	476	498	0.99
9	12	0.00013	0.0087	17.0	3.5	1	23	504	526	504	526	0.99
10	12	6.2e-07	4.2e-05	24.3	0.4	1	23	532	554	532	554	0.98
11	12	4.6e-05	0.0031	18.4	0.5	1	23	558	580	558	580	0.98
12	12	0.19	13	7.0	0.2	2	23	593	615	593	615	0.91

Sequence Information

Coding Sequence: ATGAATGACGAAACGGTTGATTTAATAGAGGAAACCAATGATGATGACATGGAAAACTGGTTGTATTATACCAGGGAGTCTAAAGAGGAGGGAGACAATTTTGATGCAGAGCAAACGGATCAGCAATTGATATATATTGACTCTGGAGATCTGGTGATAAGTAATAATGATGAACAACAACAAACATTTGATTATGAGGTTGAAGATAATGATATGGCAAATAATGTTGATGAAGAAGATAATGTGGTGCAAGTTAATAATGGTGATAGCCAAGATTGTGATAATGTTAATGATTTATCCAAACATACTTTGGTCTTACGAGAGACCATTGATGAAAATGGCCAATTGGTGGAGAGCTACTTTTGTCAGCAATGCAATATAGACTTTAATACAATAGAGGATTTTCTAAATACTCACCCTTGTATGGAGCTGTTTAATGAAAATAACGAGGAAGATCAATCAACAGACAAGGTTACATCTGTTACTGAAGATAAATTATGGGATTTAGTAGAAAACTTAGAAGAAGCAGGAGATGATGACGTTACAAACGAAGATCAGGTAAATACAGAAGAGATGACGGAAACGCAACCAAAGCTTGAAATTGGAACAGATTCTTTGGAAGCCTCTAATGCAGATATGGAATTAGATAAGGAACGTTATTTTTGCTATGATTGTCAACAAGTATTTACGGACTTGTCGTCGGCCGAAAATCATGATTGTATTAATCAATTACCTAATCCAAATCAAGCTACAGAAGAAAAGACTTCTTTAAATTCTTTAGTAGTTCACGAAGAGGAGGAGCAAATATTTAGATGTGATTTGTGTGATAAAGACTATTCGTCATTGCGTTCCTTTAACAATCACAAACGCTGGCATAGGAAAGCTGAGGAGCTACTGGGTCATACTAAGACACTGCATGAAGTATCAGTGGTGTGTGAGGTGTGCAATACTGTCtttgcttcagagaaaaatttaaaACTACACATGAAAATGCACAAAAAACATACGCTTAAAACCATTCAAGAGGCTTTACCCGTGGGAGCTCAAACTGAATACAATGAATTGAATCAATTCTTTTGTGAAATTTGCAATAAAAGTTTCGACCAAAAACTATTAGTGGTCCACAAGAATATGCATCAAAATCTCGAGGAATACAATTGTGGCAAATGTAATAAACAATTTGAAAATCTACCCAGCTATGAGATACATATGCAAATGCATATAGACACTTCCTCGAATGTTAACCATAAAACAAACTATAAGACCAATTTCAAAAGCTTTGAGGACATACCCTCCACTTCATCACAAGGTGGGGTTTTAAGTGAGCCGGGCAAGCGCAAACATGCCTGTCAGTACTGCGGCAAGGAGTTTCAAAGACCCTATGAAAAAGTCAAacatgaacgcatacataccggcgaaaaaccttatgaatgtgaggtgtgtggtaagtcctttagggtatcttattctttaactttacatttgagaacccataccgatatacgcccttacgtttgtgccacctgtaataaacgctttaagcaacaatcggtttatgtgcatcatttgaagacacacgtagttgagcgtgactataaatgtgatatttgcggtaaaagttttcgTACTTCCGTCCAGCTGATAGGTCATAAAAATATTCATACCAAACCCTATAATTGTACCGAATGTAATCGTCCCTTTGCCTCGCTCTATGGCGTTAAGCTGCACATGAAAACTCATAATAAAGGCCATAAGTCAAATAAAAATCTCAAAAATCGATGCAGTATCTGCGGTGCTTCCTATGCTCGTATCTTTGCTTTGCGTTTTCATCTCAAAGAGCAGCATGGTATAGATGTAGATCCTGGTCAATTATTGGCCGCTAGTAATAATAATACGGGTCACCAGGAAATGGATATGGAAACAGCGATATTAATGAATGCCGCTCAAGAGGCCAGTGAACAACAAATGCATTTTATAAGTGCCAATGATGAAGATAATGATAGTGAAAATGATGATGATTCGGTTAATGATGAGGATGATGATGAAGTGTTTCGACATCAAGTGGACCATGAGGAGAATATTCAAAATCATATAACTCAAAATAATTATTTGGATGAAACTGAAGCAGCCACTCAAGCAATTTTGAATACACAAGAGATTTCCGTTGATGGCTTTCCTACTGAAGAGATTATTACCGACTGGTTATCCAAATAA
Protein Sequence: MNDETVDLIEETNDDDMENWLYYTRESKEEGDNFDAEQTDQQLIYIDSGDLVISNNDEQQQTFDYEVEDNDMANNVDEEDNVVQVNNGDSQDCDNVNDLSKHTLVLRETIDENGQLVESYFCQQCNIDFNTIEDFLNTHPCMELFNENNEEDQSTDKVTSVTEDKLWDLVENLEEAGDDDVTNEDQVNTEEMTETQPKLEIGTDSLEASNADMELDKERYFCYDCQQVFTDLSSAENHDCINQLPNPNQATEEKTSLNSLVVHEEEEQIFRCDLCDKDYSSLRSFNNHKRWHRKAEELLGHTKTLHEVSVVCEVCNTVFASEKNLKLHMKMHKKHTLKTIQEALPVGAQTEYNELNQFFCEICNKSFDQKLLVVHKNMHQNLEEYNCGKCNKQFENLPSYEIHMQMHIDTSSNVNHKTNYKTNFKSFEDIPSTSSQGGVLSEPGKRKHACQYCGKEFQRPYEKVKHERIHTGEKPYECEVCGKSFRVSYSLTLHLRTHTDIRPYVCATCNKRFKQQSVYVHHLKTHVVERDYKCDICGKSFRTSVQLIGHKNIHTKPYNCTECNRPFASLYGVKLHMKTHNKGHKSNKNLKNRCSICGASYARIFALRFHLKEQHGIDVDPGQLLAASNNNTGHQEMDMETAILMNAAQEASEQQMHFISANDEDNDSENDDDSVNDEDDDEVFRHQVDHEENIQNHITQNNYLDETEAATQAILNTQEISVDGFPTEEIITDWLSK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -