Slun021401.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010003713.1:901700-906571[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0033 0.22 12.5 3.0 2 23 257 279 256 279 0.92 2 14 0.0036 0.25 12.4 0.1 3 23 288 309 287 309 0.93 3 14 4.6e-07 3.1e-05 24.7 1.4 1 23 328 351 328 351 0.97 4 14 0.00056 0.038 15.0 0.2 1 23 372 394 372 394 0.93 5 14 5.9e-06 0.0004 21.2 0.8 1 23 400 422 400 422 0.97 6 14 2.7e-07 1.8e-05 25.4 2.3 1 23 428 450 428 450 0.98 7 14 1e-05 0.0007 20.4 0.7 1 23 456 478 456 478 0.98 8 14 0.00063 0.043 14.8 2.7 1 19 484 502 484 508 0.95 9 14 0.015 1 10.4 0.3 7 23 687 704 681 704 0.86 10 14 0.018 1.2 10.2 0.8 1 19 725 743 725 747 0.93 11 14 0.013 0.86 10.7 0.2 5 23 751 769 750 769 0.95 12 14 4.4e-05 0.003 18.4 3.6 1 23 775 797 775 797 0.97 13 14 1e-05 0.0007 20.4 0.7 1 23 803 825 803 825 0.98 14 14 0.00023 0.016 16.2 2.6 1 19 831 849 831 855 0.95
Sequence Information
- Coding Sequence
- ATGAACCAGTTAAGGTCACAGGACACAAATAAAACACAAAAATGTCGCTGTTGTACAAATCCGTCTTCCAAGTTTCTTGAACTGGACACAACCAGTAAAAATTGTGGTCCAGATAAAACATACAAGGATTTGTTGTATGAATTAACCAATATCAAAGTCTCTTTAAAAGACGAGAAATCTCTAACACAAAAGATTTGCCAAAAATGTTCCAATCAATTAAGCAATTGCTACAAGTTTATAGAACAGGCGCGAGAAGTTTGCAAGCAACTCTTGCAAAGCCTAGATGATTTATGTGAAGAAGAAGAGAAAATTAAGGATTTTGAAAACATACCCGAACCTCTTATAGAGGTACCGATTGATTTGGCAAGTGTTGAGAAAGGCATAGATATAACAAAAGAAAGCCCTCTAGCTGCAGTAGTAAGTTCTTTGGAAACTGATGATATAAAAACAGAACCGGTGACAGCAGATTTTGGCACCAAGACAGAAGCGTCAATGGGTGCAATTAGCAACGAAATAAAAGAAGAAAAGCCAGAATATATAGATTATAATAATACAGTCTCAAAACACACAGAAAAGAAATTTACAACAACTGATTTGACCACAGAGCATTTAACAAAAGATTCTACTACATTAGATCCAACTCATGAGGAAGAGAGAGATCACATTGATTTCGACTATGACTCTGATTCCGAAGGTGATGAGGATGCTGAAGATCCTATTTCGGAGGACGATTTCGATAAGGATTTATCAAAAGCTCCCATAGCCATTTCTTGTGATATTTGTCATAAAATCTATAAGGATAAAGTAGCGCTGAGAACACACAAACATTATACGCACATGCCAGAAGAAAAGAAGAGACCTTGTCCTTTATGCAGCTTCAAATCTAGTCGCTTATCCAATTTAAAAGTACACATCGGTGTGGTTCATGGAGCCGATAAAGTTAAGGAGATTTTCAAGCCTGCTGATGACAGTTGTGTACAATTTCCTTGCTCCATATGTCAACAATCGTTTAGACGCAAGGATACGCTACAAAAACACATTAAACGCATTCATCAAAATCCCCAACCCAAAGAGCCGCGTCTCAAGACTAAGATACCCAAGGAAAAGGAACGTTTTCTCTGCACTTATTGCGGTGGCTCGTTCCGTACAAAATATGGTCTTGGTCGTCATGTTGTGATACATACGGGTGAACGTCCATTTCCATGCGAAATTTGTCAGAAGACTTTTAAGCGTCCCGAAGACTTACATATGCACCGCATAATACACAGCGATGCAAAACCCCACCAGTGTTTGCAGTGTGGCAAGGCATTTAAACGTTCCGACAAACTGAAAATTCACATGAGAGTTCATTCGGAATTGAGACCGTATAAGTGCAACGAATGTGAAAAGACGTTTAAATATCCCAATGTCTTAAGTACGCACATGCTAATACATACGGGGCAAAATCCGTTTCAGTGTAAAACTTGTGGTGAATCATTTTCCTTAAGATCATCTTTAAACACTCATTGTTTAAGAAATGGTCATATGAATTTTGAAAGTTTAGACACAAAGGAGTTTGTGTTGGATACAACGTTTAAGAATGATTGTCGTTGTTGTAGAAATCCATCTACAAATTTCATAAAACTTGATTCCTTTATTAAGATTTCTGATGGCAAACAGAAAACATACAAGGATCTATACGATGAAATACTAAAACTTAGCCTATCAAAGTATCAGGAAAATATGATGCCACAACAAATTTGTAACAGATGTGGAGCTGAATTGAAAAAAGTTTATTATTTTTTACAACAGGCAGATCAAGTTGATGTCGATTCTAACTCTGATTCCGAAAATGACGAGAGTACTGAAGATCCCATTTCAGAGGAATACTTCGACAAGGATTTATCAAAAGCTCCCATTTCTTGTGATATTTGCCATAAAATCTGTAAGGATGAACTTCAAATCAAGTCGTTTATCCAATTTAAAGTACACATCAATCTTGTTCATGGTGCCGATAAAGTTAACGAGATTTTCAAATCTGCTGATGACAATAGTCTACAGTTTCCTTGCTCAATATGGCAAAAATTGTTTAGACGTAAAGACACACTACAAAGGCACATTAGGCAAATTCATAAAAATCCCCATCGAAAAGAGCCGCGTCTAAAGACTAATATACCCAAAGAGAAGGAAAGTTTTCTCTGCAATTATTGTGGTGGTTCCTTCCATTCAAAGAATGGTCTAGAGCGCCATGATGTAATACACACAGGTGATATTTGTCTGAAGAGTTTTAAGCGTCGCCAAGATTTAAGTATACATCGTATAATACATAGCGATGCAAAACCTCACCATTGTTTGCAGTGTGGCAAGGCATTTAAACTTTCCGATAAACTGAAAATTCACATGAGAGTTCATTCAGAATTGAGACCGTATAAGTGTAATGAATGTGAAAAAACGTTTAAATATCCGAATGTTTTAAGTACGCATATGCTAATACATACGGGACAAAATCCGTTCCAGTGTAAAATTTGTGGTGAATCATTTTCCTTGAGATCATCATTAAACACTCATTGTTTAAGAAATAGTCATATGTAA
- Protein Sequence
- MNQLRSQDTNKTQKCRCCTNPSSKFLELDTTSKNCGPDKTYKDLLYELTNIKVSLKDEKSLTQKICQKCSNQLSNCYKFIEQAREVCKQLLQSLDDLCEEEEKIKDFENIPEPLIEVPIDLASVEKGIDITKESPLAAVVSSLETDDIKTEPVTADFGTKTEASMGAISNEIKEEKPEYIDYNNTVSKHTEKKFTTTDLTTEHLTKDSTTLDPTHEEERDHIDFDYDSDSEGDEDAEDPISEDDFDKDLSKAPIAISCDICHKIYKDKVALRTHKHYTHMPEEKKRPCPLCSFKSSRLSNLKVHIGVVHGADKVKEIFKPADDSCVQFPCSICQQSFRRKDTLQKHIKRIHQNPQPKEPRLKTKIPKEKERFLCTYCGGSFRTKYGLGRHVVIHTGERPFPCEICQKTFKRPEDLHMHRIIHSDAKPHQCLQCGKAFKRSDKLKIHMRVHSELRPYKCNECEKTFKYPNVLSTHMLIHTGQNPFQCKTCGESFSLRSSLNTHCLRNGHMNFESLDTKEFVLDTTFKNDCRCCRNPSTNFIKLDSFIKISDGKQKTYKDLYDEILKLSLSKYQENMMPQQICNRCGAELKKVYYFLQQADQVDVDSNSDSENDESTEDPISEEYFDKDLSKAPISCDICHKICKDELQIKSFIQFKVHINLVHGADKVNEIFKSADDNSLQFPCSIWQKLFRRKDTLQRHIRQIHKNPHRKEPRLKTNIPKEKESFLCNYCGGSFHSKNGLERHDVIHTGDICLKSFKRRQDLSIHRIIHSDAKPHHCLQCGKAFKLSDKLKIHMRVHSELRPYKCNECEKTFKYPNVLSTHMLIHTGQNPFQCKICGESFSLRSSLNTHCLRNSHM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -