Basic Information

Insect: Stomorhina lunata
Gene Symbol: -
Assembly: GCA_933228635.1
Location: CAKOFY010000084.1:3612745-3615940[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.0037 0.25 12.4 1.5 1 23 350 373 350 373 0.93

2 12 3e-05 0.0021 18.9 0.5 2 23 376 397 375 397 0.97

3 12 2.7e-05 0.0018 19.1 0.2 1 23 404 426 404 426 0.99

4 12 6e-07 4.1e-05 24.3 1.5 1 23 432 454 432 454 0.98

5 12 8.5e-05 0.0058 17.5 2.2 1 23 461 483 461 483 0.98

6 12 1.7e-06 0.00011 22.9 1.1 1 23 489 511 489 511 0.97

7 12 5.3e-05 0.0036 18.2 0.2 1 23 517 539 517 539 0.97

8 12 2.2e-05 0.0015 19.4 0.6 1 23 545 568 545 568 0.97

9 12 0.0037 0.25 12.4 1.9 1 23 574 597 574 597 0.95

10 12 2.2e-05 0.0015 19.4 1.2 1 23 603 625 603 625 0.98

11 12 0.00012 0.0079 17.1 0.5 1 23 631 653 631 653 0.96

12 12 0.0018 0.12 13.4 0.2 1 22 659 680 659 683 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.0037	0.25	12.4	1.5	1	23	350	373	350	373	0.93
2	12	3e-05	0.0021	18.9	0.5	2	23	376	397	375	397	0.97
3	12	2.7e-05	0.0018	19.1	0.2	1	23	404	426	404	426	0.99
4	12	6e-07	4.1e-05	24.3	1.5	1	23	432	454	432	454	0.98
5	12	8.5e-05	0.0058	17.5	2.2	1	23	461	483	461	483	0.98
6	12	1.7e-06	0.00011	22.9	1.1	1	23	489	511	489	511	0.97
7	12	5.3e-05	0.0036	18.2	0.2	1	23	517	539	517	539	0.97
8	12	2.2e-05	0.0015	19.4	0.6	1	23	545	568	545	568	0.97
9	12	0.0037	0.25	12.4	1.9	1	23	574	597	574	597	0.95
10	12	2.2e-05	0.0015	19.4	1.2	1	23	603	625	603	625	0.98
11	12	0.00012	0.0079	17.1	0.5	1	23	631	653	631	653	0.96
12	12	0.0018	0.12	13.4	0.2	1	22	659	680	659	683	0.92

Sequence Information

Coding Sequence: ATGGATTCAGTTCGTTGTTATTTGTGTGACCATGAGTTTGTGGAAGGCGAGGAACCGTGGCTAATGTTTGAGCAACGTTTACGTGAGGATGGAAAAATAGAATGTTCCTTGGCCGACTTGTTGGGTACGATAATCGAAAAGGATTTGGAGGAGACTTTAGCCCATTCTACATTGCTTTGCGATTCATGCAATGCTGATATTTTGGAATATGAAAGTCTGGAGAAGCATTTTATGGAGTTGCGAACACGAATTTTAAATTCATATCAAGAAAATTCTACTATACAGAGCATAAACAATTTAATACATGGTTCAAATGTTCCAGCCACTTCTTTGTCGCCTCAGGAAGCTGAAAGTAATACATTGCAAATATGTTCTTCTGACGGCCTTGAAGATTTATCAAATGCAGAAATGGACTTGGTAGAAGAAATTCATGATGATGAACTGGAATGTGATGTTGATAGTGTAAATGCGAATATTTTGGAGAGTAATGAAACAGATAATTTCAAAAATAATATTGTTTCTACCGTCGTTTCGGATCATTTCGATTTTGCTGCCTTTAATGAACATGTTGCACAGAATTCTTTACCATCTGGAGTATTGAACTTATCAGATGGTTTAGTTAATTTAGAAGTTTCGGAAAAGTCTTTAGATGTTCAAGATATACCATTAGATGGCCAGGACATAATTATATATGATGTCAAATCGGAGCATATTCAACAAGGAGATTTAATAATTCAACAGGATAATACCGATTGTGGTGATTTGCAAAATTATAATAGTGCTGAAGATGATGATGGTCTTAATTTTATAATTAGTACTGATATTTTCACAACTGAAGCTAATTGTGAAGATTCTCAAAATTCAGCAGCTTCCGAAGCAGTAACGACAAATGATACCGAACAAACTGCTATTTCTACACAAAATGCACCTAAGCCGATATGCAAGCAAGATGGTGATGCCTTTATTTGTTTACTTTGTGAAATATCGGAACAATTTGAACGTCATCTGCTAATGGAGCATATCCAGAAAATTCATAACTCGAGATTGTTCATATGTGAGCAGTGTCACGAAGGATTTCCTACACGGCTCGAACTAAGAAGGCATTCAGAAAAATTTCATGACATACAATGTGAATATTGCGAAAAAGTCTTCGCCAATAATCGTTTGTATCGTATACATAAACGTGTTCACTACAACAATACTAAACCTTATGAATGTCCTGTGTGTCAGAAAATGTATGTGTCCAAATCGATTTTAGAAGAACATATGAACACCCACACTGGCGATAGACCATTCAATTGCACCGAATGTCCCAAACGTTTTGCCTCAAAATATACCCTTCAAACACATATGAAAATTCATAAAGAACGACCGCGTCCCTACCAATGTGATCAGTGTGATAAACGCTTTTTGAATCAACAAAATCTTAATCAACACAAAAAGATACATGTTTCAATGAAAGCCTTCGAATGTGATATATGCAACAAGGCCTTCACTACTCAACATAGCTTGCAAGTTCATAAAATAGTACATTCTGGTCAGAGACCGTTCATTTGTCGCATATGTGGAAAAAGTTTTGCAAGGAGACCCGAAATTAAAGATCATGAACGCATACACACCGGCGAGAAACCTTTTCAATGTGAATATTGTCCAATGGCCTTTGCCCAACGTACCAATTTAGCAAGTCATAAAAAATCTACCCATTTTAATGAAAAGCTACACAAATGTGATTTATGTCTGAGATCATTTAAACGCAGACGTTTACTGGACTACCATATACAGGCAATTCATACAGGCGAAAGGCCGCATAAATGTGAGGTTTGTGGAGCAGGATTTGTGTATCCCGAACACTACAAAAAGCATATGTTAATTCATAGTGGCACCAAACCGTATGCATGTGAAGTATGTGGGAAACAATTTAACAGTCGTGATAATCGCAATGCTCATCGTTTTGTGCATAGTGATAAAAAGCCGTATGAATGTATGGAATGTGGGGCGGGTTTTATGCGAAAACCTCTACTTCTGACACACATGAAGCAAACAAAGCATATAAACGATACAATAATTATAAATCAGCCACAATTCACTCAACACCAAACAATGGAAATAGGCAGCATTACAACTACCGCATCGTCTGTGGTGTGTAACAATTTACAGGAAGATGAGTCCGAAATCGATGTTGATAACGATCTGCAATCAGAAGATGTTTCTGATGAAAAACTTGGAGAAATAATTTTTAAAGCTGTAGACTTGTTGACTGATAATATTTCAGTTTCATCGATGGCCGGCAGAAATGTTCAAGATGATGATGGCAATGTGATAACGGATGCTAAATATTTACAATTTGAAGACTTGGAACGTGATGGTCATCAAACATTAACGTGGGTCGACATTGGAGATGATAAAGTTTAA
Protein Sequence: MDSVRCYLCDHEFVEGEEPWLMFEQRLREDGKIECSLADLLGTIIEKDLEETLAHSTLLCDSCNADILEYESLEKHFMELRTRILNSYQENSTIQSINNLIHGSNVPATSLSPQEAESNTLQICSSDGLEDLSNAEMDLVEEIHDDELECDVDSVNANILESNETDNFKNNIVSTVVSDHFDFAAFNEHVAQNSLPSGVLNLSDGLVNLEVSEKSLDVQDIPLDGQDIIIYDVKSEHIQQGDLIIQQDNTDCGDLQNYNSAEDDDGLNFIISTDIFTTEANCEDSQNSAASEAVTTNDTEQTAISTQNAPKPICKQDGDAFICLLCEISEQFERHLLMEHIQKIHNSRLFICEQCHEGFPTRLELRRHSEKFHDIQCEYCEKVFANNRLYRIHKRVHYNNTKPYECPVCQKMYVSKSILEEHMNTHTGDRPFNCTECPKRFASKYTLQTHMKIHKERPRPYQCDQCDKRFLNQQNLNQHKKIHVSMKAFECDICNKAFTTQHSLQVHKIVHSGQRPFICRICGKSFARRPEIKDHERIHTGEKPFQCEYCPMAFAQRTNLASHKKSTHFNEKLHKCDLCLRSFKRRRLLDYHIQAIHTGERPHKCEVCGAGFVYPEHYKKHMLIHSGTKPYACEVCGKQFNSRDNRNAHRFVHSDKKPYECMECGAGFMRKPLLLTHMKQTKHINDTIIINQPQFTQHQTMEIGSITTTASSVVCNNLQEDESEIDVDNDLQSEDVSDEKLGEIIFKAVDLLTDNISVSSMAGRNVQDDDGNVITDAKYLQFEDLERDGHQTLTWVDIGDDKV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -