Slun000078.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomorhina lunata
Gene Symbol
-
Assembly
GCA_933228635.1
Location
CAKOFY010000005.1:22334-26149[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 13 0.014 0.97 10.5 2.9 1 23 135 158 135 158 0.93
2 13 6.4e-05 0.0043 17.9 1.4 2 23 164 186 163 186 0.97
3 13 1.7e-06 0.00012 22.9 3.8 1 23 195 218 195 218 0.97
4 13 6.7e-06 0.00045 21.0 5.0 2 23 469 490 469 490 0.98
5 13 7.6e-07 5.1e-05 24.0 3.2 1 23 496 519 496 519 0.96
6 13 0.00022 0.015 16.3 2.5 1 23 524 547 524 547 0.98
7 13 9.6e-05 0.0065 17.4 1.8 1 23 558 580 558 580 0.95
8 13 0.00078 0.053 14.5 2.6 1 23 585 608 585 608 0.97
9 13 3.1e-05 0.0021 18.9 0.8 1 23 614 636 614 636 0.96
10 13 0.00014 0.0095 16.9 1.9 1 23 642 664 642 664 0.98
11 13 7.2e-07 4.9e-05 24.1 1.6 3 23 672 692 671 692 0.99
12 13 5e-07 3.4e-05 24.5 0.3 1 23 698 720 698 720 0.99
13 13 0.0017 0.12 13.4 0.2 1 23 725 748 725 748 0.98

Sequence Information

Coding Sequence
ATGGAAATAAATACAAATTTGGCCAGCTACAATAAGAATACGACATGTCGTATCTGTATGCAGGATACATCAACCGACTTATTTCCCATATTTAATGAAGTATTTTTCGGTGACAACCACAACCCAATTACCATAGCCGAAATTATAACAGAGTGTACAAGCTATCCTGTGGCCCATAATGATCAGCTGCCAGCACAAATATGCAATAACTGTGTGGAAGCTGCTCGCAACGCCCTCAGTTTTAAAAGACAAACCGAGAAGGCCTACTGTCAGCTAAAGGCGTTGTATGATATAACATGGATTCCTAAAAAGGAAGCGGGTAGTGGTGGCGGTATAAGTATTAATAGAAGGGTGAGATCCCTCACCACAGACAGGTATACACAAACTGATAAAAGCAGTGTGTTTCAGTGTGAGTGTTGTCCGAAAAAGTTTTTCGATGAAAGTGAATTAAGGCAACATCGTGCCCTTTTTCATATATATGATGGCAAGAAATGTCGTGTGTGCGGTGAAACATTCAATCATTTGGGTCAATTAAAGGTCCATTTGTCAACAGAGCATCCGAGCGAAGGCATACGCTGTCCCTTTAAATGCAATGTATGTTCAAGGGAATTTACCCGCAAAGACCATTTGAAAAGACATTTACTGCGGGTCCACAAGATTGATGACGAAAGATTGAATATATCAAAAGTCTCCCTTGATGAACAAGAAATTGAAAACCCAACGATTCTTTCGGCAAGTCTAAATGACTACAGTAGTCATTGGCCCGATTATCAGGAGGAAGATGATAGTGAGCCAATCGCAATCGAGGCACAAGCTAGTGAAACATTTGCTGCAACAAATCCATTTTCAAGTGATGATGAAGTCTTGGAGCATCATAATTTTAATGATATGAACGAAGAAGATGTGAAACAATTTGTTGAGACTATAGCCCATCCGGAAATATCCATTAAAGTTGAAAAGTCCGAATACAATTACAATATAACAAGCGATAAAAATGAAAAACAAAATAAATCATCAAATAGTTCATTTGAGGAAATTAAAACTAATTTGCCTGATCTAAAGCCTGAAAAATCAGAAGATAACATACAAATCAAAGAAAATGATGAAGTGGATGTTGATGATGAAGATGATGAAGACGATACTGGGGATAATCTTAATAACTCATTTAATGATCTTCACAGTAACAACACCAGTGATGAGGAGGAGGACGATGACATAGATGAAGATTATGATGATGAAGAGGATGATAATATTGAAAGCAGTAATAAGTCTAACAAAAAATCAACATCTTTAAAAGAGCAAACTGTAAATGCTACCAGTTCAAAATCTAAAAGCAAACATAAAATCAACAGCTGTGACAAACCACCAAGGAGACGTCATGGTTCTTCGAAAAATGAAGAGAATCGTTGTAAAGAATGCAATCGAACATTTACACGTTACAATCATTTACTGCGTCATATGCTAACCCACAGTGATGAGAAGCCGCATGTTTGTAGTTTCTGTGGCAAAGGCTTTTCACGCTCGGATCATTTACAAAAGCATATCCAGAGTATACACAGTGAAAAGAACTATAAATGTAGTCAGTGTTCCAGTGCTTATGGCCGCAAGGATCATTTACAGCGACACATAGAAACGAGACATAATAAAGATCCTAACGTTCAAAAGCCTCAGTTCGATTGTGATATGTGTGAAAAGAAATTTACCACAAAGGCATATTTATCCAAACATAAATTATTACATACGGATCGTTTGTATGCCTGCAAGCATTGTTCAGAAACTTTCCCCGAAAAGGAACAAATGAAGGAACATCAAAAGAGCAAACATGCTCAACCCCGTAACTTCTTGTGCAATATTTGTGGAGATTCATTTCAACGCAACGAATATCTTAAGATACATATGAGGCGTCATACAGGGGAGAAGCCCTATAAATGTCGTTTTTGTGAAAAGGGCTTTCCACGTAGTACTGATTTGAAAATGCATGAAAGATATCACATAGGCCATAAACCTAATCTTTGCAATTTATGCGGTAAAGGCTTTCATCGCCCCTATAATCTTACCATACACATGCGTACCCATACGGGAGAAAAGCCTTATAAATGCAATCAATGTCCCCAAGCCTTTGCCCAAAGTAATGACTTGAAAGCCCATATAAGACGGCATACTGGAGAACGCTTTCGCTGTGATATGTGTAGTGCAGCATTTTTACAACGTTATGGCTTAAATGCTCACCTGAGAACAGTACATGGTATTATAGTTACTTCATTTACAGGACGTTTACGTAAAACTGATCAGCCGCAAGAAGGTACCGAACAACTTGAACAACTTGAACAACCGCCACCAATACAAACCTTGGTACAGGAGCAGTCACAAACTTCGCCACATCTTCCTTCACCACATCTAGACACGAGTAATGTAACACCTGCGCCTTTGTATTTAGGTCATCATTTTGTTAACCCAATACCACCAAATGTTGTTAACCCTTCTACACCAACCTCTCCCATTGATATTTCATCATCAAGTACATCTATGGCTCATTCATCAACGCAACAAATGTAA
Protein Sequence
MEINTNLASYNKNTTCRICMQDTSTDLFPIFNEVFFGDNHNPITIAEIITECTSYPVAHNDQLPAQICNNCVEAARNALSFKRQTEKAYCQLKALYDITWIPKKEAGSGGGISINRRVRSLTTDRYTQTDKSSVFQCECCPKKFFDESELRQHRALFHIYDGKKCRVCGETFNHLGQLKVHLSTEHPSEGIRCPFKCNVCSREFTRKDHLKRHLLRVHKIDDERLNISKVSLDEQEIENPTILSASLNDYSSHWPDYQEEDDSEPIAIEAQASETFAATNPFSSDDEVLEHHNFNDMNEEDVKQFVETIAHPEISIKVEKSEYNYNITSDKNEKQNKSSNSSFEEIKTNLPDLKPEKSEDNIQIKENDEVDVDDEDDEDDTGDNLNNSFNDLHSNNTSDEEEDDDIDEDYDDEEDDNIESSNKSNKKSTSLKEQTVNATSSKSKSKHKINSCDKPPRRRHGSSKNEENRCKECNRTFTRYNHLLRHMLTHSDEKPHVCSFCGKGFSRSDHLQKHIQSIHSEKNYKCSQCSSAYGRKDHLQRHIETRHNKDPNVQKPQFDCDMCEKKFTTKAYLSKHKLLHTDRLYACKHCSETFPEKEQMKEHQKSKHAQPRNFLCNICGDSFQRNEYLKIHMRRHTGEKPYKCRFCEKGFPRSTDLKMHERYHIGHKPNLCNLCGKGFHRPYNLTIHMRTHTGEKPYKCNQCPQAFAQSNDLKAHIRRHTGERFRCDMCSAAFLQRYGLNAHLRTVHGIIVTSFTGRLRKTDQPQEGTEQLEQLEQPPPIQTLVQEQSQTSPHLPSPHLDTSNVTPAPLYLGHHFVNPIPPNVVNPSTPTSPIDISSSSTSMAHSSTQQM

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-