Slun013308.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomorhina lunata
Gene Symbol
ZNF275
Assembly
GCA_933228635.1
Location
CAKOFY010000990.1:167495-170577[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0002 0.013 16.4 1.3 1 23 189 211 189 211 0.96
2 15 0.0029 0.19 12.7 0.6 1 23 217 239 217 239 0.98
3 15 6.4e-06 0.00043 21.1 0.4 1 23 290 312 290 312 0.98
4 15 9.2e-06 0.00062 20.6 0.4 1 23 430 452 430 452 0.96
5 15 0.16 11 7.2 2.9 1 23 458 480 458 480 0.93
6 15 4.8e-06 0.00033 21.5 0.3 1 23 497 519 497 519 0.98
7 15 0.02 1.3 10.1 0.4 1 23 528 551 528 551 0.95
8 15 0.00048 0.033 15.2 6.4 1 23 557 579 557 579 0.98
9 15 0.00021 0.014 16.3 0.4 2 23 586 607 585 607 0.97
10 15 5.6e-08 3.8e-06 27.5 0.5 1 23 613 635 613 635 0.96
11 15 0.0022 0.15 13.1 1.3 1 23 641 663 641 663 0.98
12 15 4.9e-05 0.0033 18.3 2.3 1 23 669 691 669 691 0.96
13 15 1.5e-05 0.001 19.9 3.2 1 23 697 719 697 719 0.99
14 15 2.6e-06 0.00017 22.3 0.7 1 23 725 747 725 747 0.99
15 15 8.7e-05 0.0059 17.5 1.4 1 23 753 775 753 775 0.97

Sequence Information

Coding Sequence
ATGTCCCTTGATCTGTCTTCAAAATGCCGCACTTGCCTAAGTGCTTCCAACATCTACCATCAATTGTTCGATTATGTGGATGAGAACTACAAAATTCTCGATATGTTAGATGGTGTTGTGCCCCAAATTGATGTTAAGAAGAGCTCCTCCCTTTCCACTATGGTCTGCCAGCCGTGTGTAGATAAATTGCTGACGGGTTATAAATTCCAACAACTGTGCATAGAGACCAACCAACGACTGCATGAATTGCTGGCCATTGGTGTACCTGAGGCTGAGCCAAAGCAGGAGCGTATGCTAGATCCTCTAGTTGGGGACGGGGCAAGCTTAAAAATGAAACAAGAAATTGAAGAGGAGGCTTGTTTTGAAAGAGAAATGCCAGCAGATAACTTGGAGTTGGCCGAAATATCTGAAGCCGAGAATTATTGGGGACTGGATAATGACGAAAATGATACAGATTCGAGCAATGAAATACTTTCAGTTTTAAAACAAAGGTCCTCCAAAAAATCACCTTTAAAACTAGAAATATCCAAAAAACCCCTTAAAATAAAACAACGTAAAAGCAACTTTTGCTGTCCGGAATGCGGAAAAGAATTTACCAGCATCAATCGTTTAAAGCAGCATACGGCAATACATATGAAAATGCGGGCCTTTTCTTGTGAAATTTGCAATACTAGATTTTCCGCTGAGAAAATTTTAAAATCTCATATGTTAACACATAAAAATAATGAAGTTCAAATAAAAAGCGATAATGACCCAGAGCGAAGTGACAGCATAAAAAATAATGATGACTGTAAACAGATTTTTGAGAATCAGCAATCTAAAGCTATTAGTGAACACGAAGAAAAGGATGTTGGAGAAGTTGGCACATTTCAATGTCCTGATTGTCCAAAATACTTCGAGAAGAAGGCTTCCCTTTCGGCTCACTATAAAGTTCACAAGAAATTTGTAAAACTGAAGAAATGTAAGAAGCTAGAACCCCATGACTTAAATGAAAGTGTTGCGTTAAATTCTTCTAATAATTTGGAAGAGGAGTTAAATGAGGACCTGGAGAATGTATCCAAGGTTGTTGTAAAGGAGGAAATCGAAATTACACCACAAATATTTGAAGAGGAATTTGAGGGTGATCCTGAATGGTTTAATAATGATTATGAAGAGTCGGAGTGTAATAATTCCGAAGAAGAATTATTTGGCAAAATGGAAGCTAAAGAAACTATAAATACAGATTTTGTGGATACTGGTATAGGAGAAATAGAAAAGCCCAATAGCAGCAACAAACGTAGTGGCAGTTTTCCTTGCGAAATGTGCGGTAAAGTATTTGATCGTCCTTATCGCCTAAAACGTCACAGTTCTGTACACTCCTTAACCCGGCCTCATGAATGCCACATTTGTAAATATCGTTTTGCCACTATTAATATCCTTAAAGCTCATCTTTTTCAACATGAAAACGAAACTGGAGGTAATTTTAATTCTAAATCCTGCCCTGAAGGTTTCAAATGTCCCGATTGCCCTAGACGTTTTGAAAAGCAAGCCTCACTCTCGGCACATCGTCAGATACACACACGTAATGCCTCGGAACATAATTATCCTTGCGTGGTATGTCAACGCAACTTCATGTCCGTGAGATCACTAACCGAACATATCACCAATAAGCATCCCGAAGTAGAGAAACACAAATGTAATCAGTGTGACAAAACCTTTGTATTACATGCCCATCTCACAGAACATTTAAATCGGCACAAAGGCAATCGTAATCTGGTGTGTCTTATATGTGAAAAAGAATTTGGCTATACCAACACTTTAAAGGAACACATGCGCACACATAGCGGAGAAAGTCCTTATCTATGTCCTCAGTGTGGTAAAACATTCCGAAGTGCAAGCAACTTGCGACAACATATAGAACGACACACGGGTTTGAAAAAATATCAATGTCCCGAATGTCCCAGCCGCTTTAATTGTAGATCAGATTTGATAAAACATGCCTCCACTCACTCGAATGCTAAGAATCATGTCtgtgatatatgtggttctcgttttacccgatcctattcattgcagaaacacaaacttttgcatacgggcgaaagacccttcaagtgtgatcaatgtaatatgacctttgctattatctatcatttgcgacgtcatatgcgcactcataccggtgagaagccctacaaatgtaaatactgtgagcgggcttatgccgaaagcggggatttaactaaacatttgagaacacatgtgggtgaaaacacctacatgtgcgatcaatgtcctatggcctttAAGTATCAAGCCGAATTAAGGCATCATCAATCTCAGCACTATAAAATGACTCAAAAACTGTTACAACAAGCTCAAAAAATGTCCGACGAAGCTCAACAGCAGGAAGAAAACAATGAGCAATATCAACAACAGAATTCAGTACAAGTACAGCAATTGTCAACCTCAGAGCCTTTCACAAATTCGGTAGAACCTCAACATCAGCAGCAAAATTCTGAAACTCAAGCTCTACTTAAACCAGTTGAAATATCCCAATTGCCTTTACGTATACCAAGTTATCAACAGCATAATTCCTTATTAGAACATCATAGACAGGTGTTACCAGATCAAACCCATCAATCACAGCAGCATCATTCCAAATTGGATGAAGAACCACGACAGCAACCGTCAGAAAATTTAGATGTTAAGAATCTCCCTCAGTAA
Protein Sequence
MSLDLSSKCRTCLSASNIYHQLFDYVDENYKILDMLDGVVPQIDVKKSSSLSTMVCQPCVDKLLTGYKFQQLCIETNQRLHELLAIGVPEAEPKQERMLDPLVGDGASLKMKQEIEEEACFEREMPADNLELAEISEAENYWGLDNDENDTDSSNEILSVLKQRSSKKSPLKLEISKKPLKIKQRKSNFCCPECGKEFTSINRLKQHTAIHMKMRAFSCEICNTRFSAEKILKSHMLTHKNNEVQIKSDNDPERSDSIKNNDDCKQIFENQQSKAISEHEEKDVGEVGTFQCPDCPKYFEKKASLSAHYKVHKKFVKLKKCKKLEPHDLNESVALNSSNNLEEELNEDLENVSKVVVKEEIEITPQIFEEEFEGDPEWFNNDYEESECNNSEEELFGKMEAKETINTDFVDTGIGEIEKPNSSNKRSGSFPCEMCGKVFDRPYRLKRHSSVHSLTRPHECHICKYRFATINILKAHLFQHENETGGNFNSKSCPEGFKCPDCPRRFEKQASLSAHRQIHTRNASEHNYPCVVCQRNFMSVRSLTEHITNKHPEVEKHKCNQCDKTFVLHAHLTEHLNRHKGNRNLVCLICEKEFGYTNTLKEHMRTHSGESPYLCPQCGKTFRSASNLRQHIERHTGLKKYQCPECPSRFNCRSDLIKHASTHSNAKNHVCDICGSRFTRSYSLQKHKLLHTGERPFKCDQCNMTFAIIYHLRRHMRTHTGEKPYKCKYCERAYAESGDLTKHLRTHVGENTYMCDQCPMAFKYQAELRHHQSQHYKMTQKLLQQAQKMSDEAQQQEENNEQYQQQNSVQVQQLSTSEPFTNSVEPQHQQQNSETQALLKPVEISQLPLRIPSYQQHNSLLEHHRQVLPDQTHQSQQHHSKLDEEPRQQPSENLDVKNLPQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
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90% Identity
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80% Identity
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