Slun019464.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stomorhina lunata
Gene Symbol
-
Assembly
GCA_933228635.1
Location
CAKOFY010003627.1:460513-465725[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 21 0.00039 0.027 15.4 2.0 3 23 48 69 46 69 0.95
2 21 3.9e-05 0.0027 18.6 1.0 1 23 76 99 76 99 0.98
3 21 0.016 1.1 10.4 2.0 1 23 104 126 104 126 0.92
4 21 0.00081 0.055 14.5 0.1 1 23 132 155 132 155 0.90
5 21 0.00031 0.021 15.8 1.7 1 23 161 183 161 183 0.99
6 21 8.5e-05 0.0057 17.5 3.7 3 23 191 211 190 211 0.97
7 21 0.0093 0.63 11.1 1.5 1 23 217 240 217 240 0.97
8 21 0.0057 0.38 11.8 2.5 3 23 355 376 354 376 0.97
9 21 2.8e-05 0.0019 19.1 1.7 1 23 383 406 383 406 0.97
10 21 6.4e-06 0.00043 21.1 0.2 2 23 412 433 411 433 0.97
11 21 0.00033 0.022 15.7 2.5 1 23 439 462 439 462 0.96
12 21 1.5e-05 0.001 19.9 2.4 1 23 468 490 468 490 0.99
13 21 5.2e-06 0.00035 21.4 1.7 2 23 497 518 496 518 0.97
14 21 0.061 4.1 8.6 1.6 1 23 524 547 524 547 0.96
15 21 0.025 1.7 9.8 4.7 2 23 661 683 660 683 0.95
16 21 2.5e-05 0.0017 19.2 0.2 1 23 690 713 690 713 0.98
17 21 0.00015 0.01 16.7 0.1 1 23 718 740 718 740 0.98
18 21 0.00086 0.058 14.4 0.6 1 23 746 769 746 769 0.95
19 21 0.00019 0.013 16.5 0.8 1 23 775 797 775 797 0.99
20 21 8.5e-05 0.0057 17.5 3.7 3 23 805 825 804 825 0.97
21 21 0.016 1.1 10.4 1.6 1 23 831 854 831 854 0.97

Sequence Information

Coding Sequence
ATGATATCCAATGCTATAAAACAATTAAAGTCTTGGCTTTTCCAAATGAAACGTCGTAAGACTAAACCTAGCAAATGTCATGAAAAATATTTAAAACTGTGTAAATTTTTAACGACATCGCGCAAAAAAGAGAAAATATTTTGTAGTATTTGCGAAAAAGTATTTTTTAAAGAGCACAACTTAAAAAACCATCTATCGAAAGTCCACAATGTTGGTGACTTGCCATTTAAGTGTGACCAATGTGGAAAAAAATTTGCACAAAAGACAATTCTACAACAGCACATAATGCGATTGCATGTCAGCAGGAAACATCGGTGTGAACTTTGCAGCAAAATGTTTGCTACCAAAACTGAGCTAAACTTTCATAACATGGTACATACTGCCGAAAAGCCGCATGTCTGCGAATTTTGCGGCAAAGCATTTAGAGTAAAGGCACAGTTAGGCTGGCACGTTACCGCTATTCACACGAAAATAAGGGCCTTCAAGTGCACAATGTGCCCTAAAGACTTTTTAAAAAAACGAGATCTAACGGATCATATTAAGACACATTTAAATATAAGAGACAAAATATGCGAAACCTGTGGCAAAGGATTTACAAATTGCCACTCCTTGATACGACACCGTCAAATACATTCAGAGATTAAGAAATTTGCCTGTAAACTGTGTGATGCTAAATACCATCAATTTGTTGGACTCAATGCCCATATGAAACGTTACCATAATATTAATTCACTCATTCTTGACCAATTGGACGAAACTACCTGTAATTTTATTGAAACTTATGAAAAATTTCCATTGCTTTACGACGGAAAACATCCTTTGTTTGGAAAAGTTGAAGATAAACAAAAGGCTCTGACAGACATGCGCAAAGCTCTTTTAAGTCAGCACAATATAAATTACGACGAAGAAACGATATCTGAGGCCATAGATCAATTGCACTCTACGTATTATGTATCCAAACAAAGCACTCATAAAGGTGGTGCAATTCTTCACATGTGTCACGAGAAATATGTTCAAATGTGTAAATTTCTACCAAAGAAGAGAATAATAGTAAAGATTTTGTGTAGCATTTGCAATAAGAATTTCTACTCTGACAATCACTTTAAATATCATATGGCGAAAGTTCATCAAATTGGACAGTTTTTGTATCCATGTAATCACTGCGATAAGAAACTTATTACGAAATCCGCTTTACAAACTCACACTCAGAGGATACATCTTCGAAAGAAACTGTCTTGTGAATTTTGTGGCAAGTTATTTGATGTTCCTTCAAATTTGAAGAACCACATCCGAGTACATACAGCAGAGAAACCACACGTTTGTGACCTATGTGGTAAAGGATTTAGATTAAGACATAATTTGGGAAAACATATTACACGTATGCACGACAAGATACGCGCTTTCAAATGTACAATGTGCCCTAAAGATTTTTACCATAATGCCGATCTTAAGGATCATGTAAAAACGCACTTAAACATACGGGACAAAGTATGTGAAACATGCGGCAAAGGATTTACAAATAGTCACTCCTTGATACGACATCGCCAAATACATTCAGAGATTAAGAAATTTGCTTGTAGACTATGTGATGCTAAATTTCATCAATTTGTGGGACTGAATGGTCATATGAAACGTTACCACAATATTAAACCACTCACTCTTGACCTATTGGACGAAACTACATGTAAGTTTATCGATATTTACTCAAAATTTCCATTACTTTACAATGGAAACCATCCGTCGTATGGTAAATATGAGGATATGCAAAAAGCTATAACAGAAATGCACGATATCTTAGTGAGTGATCATAATATAGATTTTGGAGAAGAAATGCTATCTCATGCCATCGATCAATTACAATCTTGGTTCTATTTTACAAAACGGCGTCAACAAAAAGCTGGAGCTAAACTTCAAAAATGTCATGAGACGTATTTACAAATGAGCAATTTTTTGCCCGAGAAGCGATTAAAAGTAAAGATTGTGTGTAGTATTTGTAAACAGAAATTTCATACAGAGCATAATTTTAAATACCATTTGTCAAAAGTTCATCAATTGGAAGATTTTTATTTTCAGTGCGATCAATGCGGAAAGAAACTTGTTTCGAAATCTGCCCTACAAGGTCACATTCAAAGAGTTCACAGCGAAAAGAAATATCGCTGTGAGTTTTGTGGAAAATTATTTGCCATACCTTCAGAGCTGAGAATTCACACTCTTGTGCATACGGCCGAGAAGCCCCATGTTTGTGAATTGTGTGGCAAAGGCTTTAGATTAAGGAATAATTTGGGTCTTCATATAACACGTATGCACACCAAGATACGTGCCTTCAAATGCACAATGTGTCCCAAAGACTTTCTCAAAAACGGTGATTTAAAGGATCACATAAAAACACATTTAAATATACGTGATAAAATTTGCGAAACTTGTGGCAAAGGATTTACAAATTGTCACTCCTTGATACGTCACCGTCAAATACATTCAGAGATTAAAAAATTTGCCTGTAAACTATGTGATGCAAAGTTTCATCAATTTGTTGGACTAAATGGACATATGAAACGTACTCACAATGTCGTAAAAAAAGACACTAACAATTAA
Protein Sequence
MISNAIKQLKSWLFQMKRRKTKPSKCHEKYLKLCKFLTTSRKKEKIFCSICEKVFFKEHNLKNHLSKVHNVGDLPFKCDQCGKKFAQKTILQQHIMRLHVSRKHRCELCSKMFATKTELNFHNMVHTAEKPHVCEFCGKAFRVKAQLGWHVTAIHTKIRAFKCTMCPKDFLKKRDLTDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEIKKFACKLCDAKYHQFVGLNAHMKRYHNINSLILDQLDETTCNFIETYEKFPLLYDGKHPLFGKVEDKQKALTDMRKALLSQHNINYDEETISEAIDQLHSTYYVSKQSTHKGGAILHMCHEKYVQMCKFLPKKRIIVKILCSICNKNFYSDNHFKYHMAKVHQIGQFLYPCNHCDKKLITKSALQTHTQRIHLRKKLSCEFCGKLFDVPSNLKNHIRVHTAEKPHVCDLCGKGFRLRHNLGKHITRMHDKIRAFKCTMCPKDFYHNADLKDHVKTHLNIRDKVCETCGKGFTNSHSLIRHRQIHSEIKKFACRLCDAKFHQFVGLNGHMKRYHNIKPLTLDLLDETTCKFIDIYSKFPLLYNGNHPSYGKYEDMQKAITEMHDILVSDHNIDFGEEMLSHAIDQLQSWFYFTKRRQQKAGAKLQKCHETYLQMSNFLPEKRLKVKIVCSICKQKFHTEHNFKYHLSKVHQLEDFYFQCDQCGKKLVSKSALQGHIQRVHSEKKYRCEFCGKLFAIPSELRIHTLVHTAEKPHVCELCGKGFRLRNNLGLHITRMHTKIRAFKCTMCPKDFLKNGDLKDHIKTHLNIRDKICETCGKGFTNCHSLIRHRQIHSEIKKFACKLCDAKFHQFVGLNGHMKRTHNVVKKDTNN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-