Slun012725.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000919.1:205159-210734[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 4.3e-19 5e-16 58.6 0.0 2 45 449 493 448 493 0.97 2 2 8.8 1e+04 -3.2 1.1 3 12 526 535 526 538 0.83
Sequence Information
- Coding Sequence
- atgcCCACCGATCCTGCCAATTTAACAAAATCTGATAGTAAATCATCAAATGATGCTAcagaattggttggtagtggcggtaacaatgggcaattgggtggtggtaatagtggcagcagtacaggcggtggcggcaataccagtagtggtggtctaggcagcagtggtggtggtagtgttagcgactcgatttggggtagcaccgaatcacaatttcaacaacaacagcagcagcaacaacaacagcaacatcaacagcatcaccaacagttgcaacaacagcagcaacatcatcatcagcaacaacagcagcagcaacagttgcacacacaattgcaaaatagtcaaacacaaacctcacaacaacagcaacaacaacagcagcaacagcatcatcagcaacagttacgacgcacaccgtctccattaggcgctggcgcctcaccagcaacTAGACGaaaacgtctaagaaagtcttcaaataatgGATCCGGTGATCGTACCAATTCTGAAGATCATAACACATCTTTGGATGCAGCCACTGCTGGTGGTCTTACTTTGTCCCAAATGAGTCAAATGTCATTTGGAGGTGCAGCTACAAATAGTGCTCTCGGTGGTTTAGCCGCACACTCTTTGCACACAGCTAAATTACTTAAAGAAGCCTCTAATACTGATTTGGAAACGAATCCCCAAGATTCAGATAGTTTAGATGATACCCATGGACATGTACATATGCAAATTAAACCGGAAGTTGATATGAGTGGAGTGCCACAATCGATGCCATTGGATATATCCGGTCCTACAACACCTTCTGAACACGATGCTCCAAATTCACAATCTGCACATTCAGGTTTACAATGGCCGGTTGTTGAACCAAATTATTCACGATTTTCGCTGACATCCTGTCCCACCAATTTAATTGGCAACAACAATCAAAATACAAATACCAACAATAACAACAGCTCGAGCAGCGATCAACAGCAGCAACAACATCGTCAGCAGCAAGAAGCCGTTGCTAGTCAACAGCACCAACAACAACAGCAACAACACTTGCAGCAATTGCAACAATACCAACACCAACAAAACTCTGCATATTCGCCTCAAATCATAACGATCAGTGGTTATACCAATGCAACAGCTGCTGCTGTTGCAGCGGCTCAAAATCTATCACCACCCTCACCAAACGATGGCAATATGGTGCAATCAGTATATAGCCAAGGACCAACACCCACCCAATCACCGGTGGGCAATGCTTCAGGTTCTGGTGGGGGCAGTAACATGTCCGGCGGTAACTCGGCCAACAACGCCAATATCAAGCGAAAGCGTTCGGTTAATCCACAAGGTGATGAAAATTTTATACGGGCTCTGGAGGCAGTGCGTTCGGGAGGTATAGGTTTCTGTAAGGCAGCACGACTGTATGGCGTTAATAACCGTACGTTGTGGTTGGAATACAAGAAACGCGGTTATCCTGTGTCCAGGCCAAGCATAAAATCACGTGTGGTCAAGCAAGAACCGAATCTCTCACCCTCCCCCACACCACCAACAAATGCCACAGACGATACCAATGAAAACTACGATCATATGGCAGCAGCAGTGGCGGCCGCCCAGACAGCCGCTCTAAACATGCAAATACCACCGACTTCCGAAACACCGACACCCTCATTAATGTGTACACCACATCATGCGGGAACAGCCGCTGGTGCTACCACACATCCCACAATGGGTGTAATGAGTTTCTTGGATACCCGCCACATGGATTTCCCAGCCAGTCTGCATACAATGTCACGTCAACGTTACATAGATGCTGGAGCTGGCAGTGGTGCCGGGGCGGGCACCATCAATGTTAATCCGGCAGCGGCAATGAATTTACAGAGTATTAACTTTAACTCAATATAG
- Protein Sequence
- MPTDPANLTKSDSKSSNDATELVGSGGNNGQLGGGNSGSSTGGGGNTSSGGLGSSGGGSVSDSIWGSTESQFQQQQQQQQQQQHQQHHQQLQQQQQHHHQQQQQQQQLHTQLQNSQTQTSQQQQQQQQQQHHQQQLRRTPSPLGAGASPATRRKRLRKSSNNGSGDRTNSEDHNTSLDAATAGGLTLSQMSQMSFGGAATNSALGGLAAHSLHTAKLLKEASNTDLETNPQDSDSLDDTHGHVHMQIKPEVDMSGVPQSMPLDISGPTTPSEHDAPNSQSAHSGLQWPVVEPNYSRFSLTSCPTNLIGNNNQNTNTNNNNSSSSDQQQQQHRQQQEAVASQQHQQQQQQHLQQLQQYQHQQNSAYSPQIITISGYTNATAAAVAAAQNLSPPSPNDGNMVQSVYSQGPTPTQSPVGNASGSGGGSNMSGGNSANNANIKRKRSVNPQGDENFIRALEAVRSGGIGFCKAARLYGVNNRTLWLEYKKRGYPVSRPSIKSRVVKQEPNLSPSPTPPTNATDDTNENYDHMAAAVAAAQTAALNMQIPPTSETPTPSLMCTPHHAGTAAGATTHPTMGVMSFLDTRHMDFPASLHTMSRQRYIDAGAGSGAGAGTINVNPAAAMNLQSINFNSI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01397556;
- 90% Identity
- iTF_01236810;
- 80% Identity
- -