Slun012720.1
Basic Information
- Insect
- Stomorhina lunata
- Gene Symbol
- -
- Assembly
- GCA_933228635.1
- Location
- CAKOFY010000919.1:174224-176098[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1.1e-06 0.0013 18.9 0.0 8 39 403 434 399 438 0.87 2 4 2.4e-14 2.8e-11 43.4 0.0 3 44 452 493 450 494 0.94 3 4 0.026 30 4.9 0.0 27 38 523 534 519 540 0.88 4 4 1.4e-14 1.6e-11 44.2 0.0 4 41 562 599 562 601 0.92
Sequence Information
- Coding Sequence
- ATGAATAATTTAAAGTGGATGGGCCATTCGGCCACGATATTAGATATACACAAAAATCTGCGAGCCGATTTAAAGAGCTGTGAAGTGACTCTGGTGGCCAAGGGACATTGTGTTAAGGCACATCGTTTTGTTTTATCGTCATGCAGTGATTTACTACGCTGTCTGCTGTCGGATGTGCCCCTGGGTCAGGAGTGTTGCCTAATGGTGCCGGACATAAAAGGTCATTTGCTAGACAATGTATTGGCGTTTATATATTTGGGAGAATGCTCCCTATCTTCGACAAACTTGTCTGAGTTCTTGGAAGCCATTAACGTATTGGGCATTAAAAGTGCCATAAGTTTTGAGTGCAATACAAATGCTGCAATGCAGCAAACTTCACAAAACAGTAGTCATCAGAATCTTGTACTAGAAGCTAATACAACTATGGCACCTGTCGCCAGCAGTACGTTGACTAGTCGTCAGGTGACAGTAGGTGGTGGTTCAACTGAGTCTTTGCATCAGGAAGAAGAACTAATGGAAACCCAGAGTGTAATGCATAATGATCCTAATGTCGAAGCGACTAATGTAAACAACACTGAAGCTACTGCAAGGGAATTGGATTTTCTGGATGTTTATCATGAGCCTCAGCATAAAATTACCTATTCCATTGAACATCTGCCAGGCTCAGCGAACGGTAATGAATTTATCCTAACAGAAAACTCTGGAACATTTACACTTACACATAGTGGTAAGTTAGAACCGTCGAATTCTCCCCCTGAATCGTCCTCAACTATGGAAGTCACAGAGGACGATGGTTGTGAAACCCACATAATAGAAGAATACAGTAGTGGCGATGAGCCTTTAATACAAATGGGTGAAACTTTACCAGAATCACAAAGTTTAACTGTAGTACAGACGTCGCAACAACAAACCACAGCCTCCATTCCTGTAACAGCCACCTCAATTATACAAGTCAAACCAAAAATGAAAACACTTAAACTGAAACATCATCAGCCCGCTAACTCTCAACAAATTTTGAGTAAAATTGAGCAACTTCCAGACGATTCTGGCGGCGACGATCCCATCTCCATATTACAAACATCAAATGAAAGTTTTACCCTTATTAAAGATAGCAGTATGATGTCGACAAGTAATGCTAGTCATGAAGAATCGTCAGAATTTTCAATGAACAACTCTGGTTCATCAAATGCTGCCGCCGCAGATTTGGCTTATCAGGCTATGGTCAATGAAGGCATCTCCTTGCCTAAGGCAGCCGACAAATTTAATGTCTCTAAAGCAGAACTTTGGCGACGCGTTCGTAGTACAGGAGTTGAGCAGCTCAATAAATCGATTAAACTCGATCCCGATAAGATCGATATTATCGAACTGGCTAGTAAGGCTGTTATAAATGAGGGCCTGTCTTTACAAAAAGCCGCAATTCGATATGACATCTCTAAAACCGTACTCTGGCGCAGAGTACGAAAACATCCACAGTACATGAAAACTGCCAGAGAAAATCCAATTATATCAAGAGCATACGAACGTCTCAAAGCTGGAGAATCTCTTAAAAGCATATCACAAGATCTGGATATTCCCATGTCAACGTTACATCGTCATAAAGTTCGCCTTTCGCAAACAGGTCAACTGCCGGATTTTGTTACTTGCAAAAAACGTGACAGCATGTCCAAAGATGATCTTAAATTAAAGCTTTCGAAAGCAGTGCATGCTTGCGTGCACGAGGGTATGTCACAAAATCATGCCGCTAATTTATTTCAAATTTCCAAAAGCACTTTATGGCGTCATCTGCAAAAACGTGTAGCTGAAGCTGAGGCAGCCGAGACTGAGTCAATGGGCGAGGATGAGGATGAAATTAAACAGGAAGTTATACTTTCATAA
- Protein Sequence
- MNNLKWMGHSATILDIHKNLRADLKSCEVTLVAKGHCVKAHRFVLSSCSDLLRCLLSDVPLGQECCLMVPDIKGHLLDNVLAFIYLGECSLSSTNLSEFLEAINVLGIKSAISFECNTNAAMQQTSQNSSHQNLVLEANTTMAPVASSTLTSRQVTVGGGSTESLHQEEELMETQSVMHNDPNVEATNVNNTEATARELDFLDVYHEPQHKITYSIEHLPGSANGNEFILTENSGTFTLTHSGKLEPSNSPPESSSTMEVTEDDGCETHIIEEYSSGDEPLIQMGETLPESQSLTVVQTSQQQTTASIPVTATSIIQVKPKMKTLKLKHHQPANSQQILSKIEQLPDDSGGDDPISILQTSNESFTLIKDSSMMSTSNASHEESSEFSMNNSGSSNAAAADLAYQAMVNEGISLPKAADKFNVSKAELWRRVRSTGVEQLNKSIKLDPDKIDIIELASKAVINEGLSLQKAAIRYDISKTVLWRRVRKHPQYMKTARENPIISRAYERLKAGESLKSISQDLDIPMSTLHRHKVRLSQTGQLPDFVTCKKRDSMSKDDLKLKLSKAVHACVHEGMSQNHAANLFQISKSTLWRHLQKRVAEAEAAETESMGEDEDEIKQEVILS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00199788;
- 90% Identity
- iTF_01374207;
- 80% Identity
- iTF_01374207;