Sbis045250.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000184.1:235132-237714[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 4.7 1.9e+03 2.6 0.7 2 23 119 141 119 141 0.94 2 19 0.61 2.4e+02 5.4 0.7 1 23 190 212 190 212 0.91 3 19 0.063 25 8.5 4.0 2 23 219 241 218 241 0.93 4 19 0.00031 0.12 15.8 1.0 2 23 249 271 249 271 0.97 5 19 0.53 2.1e+02 5.6 0.5 1 23 352 374 352 374 0.97 6 19 0.0013 0.53 13.8 0.2 2 23 402 423 401 423 0.97 7 19 0.24 95 6.7 0.3 3 23 434 455 433 455 0.97 8 19 0.001 0.4 14.1 1.2 2 23 462 484 462 484 0.95 9 19 2.7 1.1e+03 3.4 1.4 1 23 547 569 547 569 0.90 10 19 4 1.6e+03 2.8 0.4 2 23 573 593 573 593 0.78 11 19 0.095 38 7.9 2.2 2 23 601 623 600 623 0.93 12 19 0.00034 0.14 15.6 1.8 1 23 630 653 630 653 0.98 13 19 0.017 6.6 10.3 1.6 1 23 661 684 661 684 0.91 14 19 0.017 6.8 10.3 1.1 2 23 689 710 688 710 0.95 15 19 3.4e-05 0.013 18.8 0.2 1 23 718 740 718 740 0.97 16 19 0.0015 0.61 13.6 1.8 2 23 747 768 746 768 0.95 17 19 0.12 49 7.6 4.2 1 23 776 798 776 798 0.96 18 19 3.8 1.5e+03 2.9 2.3 1 13 804 816 804 825 0.79 19 19 0.077 31 8.2 2.1 2 20 831 849 830 851 0.93
Sequence Information
- Coding Sequence
- atgtttccTAACGAAGCTTCTATTAGAGCTCATGCCAAAAAAGATCATGGCAATGAAAACATAGTTGTAAGTGATGAGAGTGAATATGAAGATATTCAAACATTGGAGTCCTCAGATGAAGAGAGCTCTATTGACACTAAGAAGACATCGACCAAACAAATTAAAGCACCAGCTAAGTCTTCTTTAGATTTTCTAGAAGACTGGAATGAGGATGAAGAGGACttgaataatgttaaaaattcatCAGAGCTTACCTCAGTTAAAGCTTCTTTATCAAAAACAGAACACGCATCTCAAAATGATGATTTTAATGAAGACGAGGATGATGATGAGCAAGATCAGTCGTCTAGaccaacttgtttgttttgcAATGCCAAGTTTTTATCATTTGATTCCGTTCAGGATCATATAAAAATGACTCATAGAGACAGAGCATCTTATTTAAATCTAGGGTTGAAATCTTCTCCTCCTTTAGAAAGCTCTGAAATTGACTCCACAACAGatattgttgaaaacaaaaatccAATAAAGGTTGGTCGTAAAAGTTCTGTTTCTAAGATAAAATCTTTTAAATGCAATGTATGTGGAATCAAAAAAGTGTccttgaaatttattaaaaagcataTACAAGCCCACAAGAGAAAAATAGCCTTGCAGTGCAAATTGTGTGgaacttgttttagaactattGTTGCTATTAAAGTTCACAGGTACAGATGTCACAAAGTTGTTGGAGTTAAAAGGAAGTGTAGCCTGTGTAAGATGATATTTATTGATAGTAATCAACtaaaaacacatattaaaaaagtTCACAGTAAACCAATTATTCAGAAAAAGATAAAGCTAAAAGTTGTTGAGCACGAGTCAACATCTGGTTATAGTTTAAGGAaatctgttgatagttccaagtTAACACGTAATTTACAAAGATCCAACGTAAAGAAATTTGATACAAAAACTTCTCAGCTAACTCATGATAACTCTAAAATTAGTTCGTCTGAAGTGTCGTCTACTAGTCTTGAAAACGGTTTACAGTCTTTTACTCGCCAAAAATACATATGTTCTCTATGTAATTTTGTATCAAATTCAGATTTGGAAATGAAGGGCCATATGAAAAAACATAACATCGAGGAAAATGGAAGTACAGGAAAAATACTAACAGTAGGCctaaataagaaaaaagttaaagaCAGTTCTAAACTAAAATGTAATGAATGTGACATTTATGTGTCAGAACCAAGACAGCTTGTCAATCATATGAATAGACACAAAGCAAACACATGCAATGATTTAGGTCTGTGTTTTTACTGTAATAGACTATTTTTAGAAAAAGAACAACTCATCATTCACTTAAATACAGCACATAACTTCAAAACAAATCCTAAATGCACCATTTGTGGAAAAAGTTATGCTCATGGTAAAGACTTGAAACTTCATTTTTTGAGAGCGCATTTCAGTTCAAAAACAGAGAGTTTAATTAAACAAGTAAGTGAACAGTTGCTCAATAAAAAAACAACCATCAATTCTGATTGCACAGACGCCAATGATGTGTATAGTAAAGTGTTCAAAGAACTGCAAGATTTGACTGGAGAAGGAAATGAAGAAATATCCATGGATTTACCAGTGTCTTCTCTACAATATAGCTGTCCTCTATGTGACTTCAgtgattgtaataaaaatgttgttgaaaAACATTTATCGTCTCATCCACAAAACTATTGCAATATTTGTAAAACCCTTTTCAACACAGAAGAGGCTATTAAACACTTAGAAAATCATAGTATTGACTTTCAAAATAAGACCTGTCCTGACTGTGAAGATACATTTCATGATAGCATACATTTACAAAGTCATAATCTAAGGATTCATTCTGGTGGgaagaaaatgtataaatgtagTATGTGTGAAAAATCTTTTTTCTCAGAAAAAGGTTTGCTATCCCACAAACAAACGATGCATGGAAAAACTTCCAAAAGAGTGTTTTCATGTAATAAATGCAAAATGAATTTCTATACTGAAAAAGAATTTGAAACTCATGTAGAGTTTGCTCACCGTGTTGTTTTGAATTGCAAATACTGCGATAAAACTCTGGATAATATGAAAAAACTTGTACAACatgaaaataatcatttaaaacaaGTGAAAAGTATCTACAAGTGTAACGTTTGTGGAAAAGTCGTAAAAACACTTGCAGCGCTTAAAAGTCATAAAACAGTTCACAACCGTAACATTCCTCTACAGTGTGAAGTCTGCAATCAGAGTTTCAAATCTTTTCATGCTTTAAGAGAACACTCAGCCAAACATTCAGATAGTCAAGAGAAAAGATTTTTTTGTAGTGTTTGTGGCAAAGGATTTTACTTTTACGACTCTCACTACAGACACCGTAGAATACATCTTGAccctttactttttaaatgtaatgcaTGTGGGGAAAGATTCCAAAGCAAACTTAAGTgtcaagaacataaaaaaatgtgtaaagtgTCAACTCAGTGCTCCAAGTGCTTAAAGTTTTACAATTCAAACGTAGCATTAAAAAAACACGAGTGCCTTGTTAAAAGAAGTACTGCCTTTTCTAAATGA
- Protein Sequence
- MFPNEASIRAHAKKDHGNENIVVSDESEYEDIQTLESSDEESSIDTKKTSTKQIKAPAKSSLDFLEDWNEDEEDLNNVKNSSELTSVKASLSKTEHASQNDDFNEDEDDDEQDQSSRPTCLFCNAKFLSFDSVQDHIKMTHRDRASYLNLGLKSSPPLESSEIDSTTDIVENKNPIKVGRKSSVSKIKSFKCNVCGIKKVSLKFIKKHIQAHKRKIALQCKLCGTCFRTIVAIKVHRYRCHKVVGVKRKCSLCKMIFIDSNQLKTHIKKVHSKPIIQKKIKLKVVEHESTSGYSLRKSVDSSKLTRNLQRSNVKKFDTKTSQLTHDNSKISSSEVSSTSLENGLQSFTRQKYICSLCNFVSNSDLEMKGHMKKHNIEENGSTGKILTVGLNKKKVKDSSKLKCNECDIYVSEPRQLVNHMNRHKANTCNDLGLCFYCNRLFLEKEQLIIHLNTAHNFKTNPKCTICGKSYAHGKDLKLHFLRAHFSSKTESLIKQVSEQLLNKKTTINSDCTDANDVYSKVFKELQDLTGEGNEEISMDLPVSSLQYSCPLCDFSDCNKNVVEKHLSSHPQNYCNICKTLFNTEEAIKHLENHSIDFQNKTCPDCEDTFHDSIHLQSHNLRIHSGGKKMYKCSMCEKSFFSEKGLLSHKQTMHGKTSKRVFSCNKCKMNFYTEKEFETHVEFAHRVVLNCKYCDKTLDNMKKLVQHENNHLKQVKSIYKCNVCGKVVKTLAALKSHKTVHNRNIPLQCEVCNQSFKSFHALREHSAKHSDSQEKRFFCSVCGKGFYFYDSHYRHRRIHLDPLLFKCNACGERFQSKLKCQEHKKMCKVSTQCSKCLKFYNSNVALKKHECLVKRSTAFSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -