Sbis016094.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- L
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000031.1:2410112-2438817[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.22 89 6.8 5.9 1 23 20 42 20 42 0.98 2 18 2.5e-07 9.8e-05 25.5 2.3 1 23 48 70 48 70 0.99 3 18 1.9e-05 0.0076 19.6 0.2 1 23 76 98 76 98 0.98 4 18 0.0002 0.08 16.4 0.1 1 23 113 136 113 136 0.96 5 18 0.013 5.3 10.6 2.8 1 23 230 253 230 253 0.96 6 18 0.61 2.4e+02 5.4 0.1 3 23 265 286 263 286 0.88 7 18 4 1.6e+03 2.8 0.1 3 23 362 382 361 382 0.96 8 18 0.16 63 7.2 0.1 3 23 407 427 405 427 0.94 9 18 0.075 30 8.3 0.3 3 23 437 458 435 458 0.92 10 18 0.062 25 8.5 0.1 1 23 463 486 463 486 0.92 11 18 6.1 2.4e+03 2.2 0.1 1 23 493 518 493 518 0.90 12 18 1.5 6.1e+02 4.1 0.2 1 20 537 556 537 559 0.90 13 18 1.7 6.7e+02 4.0 8.5 1 23 563 585 563 586 0.95 14 18 6.7 2.7e+03 2.1 0.1 3 23 643 665 642 666 0.83 15 18 0.00036 0.14 15.6 2.3 2 23 678 699 677 699 0.96 16 18 0.049 19 8.8 0.6 1 23 709 731 709 731 0.96 17 18 0.087 35 8.0 0.7 2 23 739 760 738 760 0.96 18 18 0.1 40 7.9 0.0 2 23 843 865 842 865 0.95
Sequence Information
- Coding Sequence
- ATGCGAGGCGCTGATGTTATCATCGGCCTCACAAAGACACACAGTGAGCACATGCCGTTTCGTTGTGAGTTCTGCAGTCGCCTGTTCAAACACAAGCGGAGCCGGGACCGTCACATCAAACTGCACACGGGGGACAAGAAATACCGCTGCACCCAGTGTGACGCCGCATTCTCCCGCAGCGACCATCTCAAGATCCACATGAAGACGCACGACAACCAGAAGCCGTTCCAGTGTACGGTGTGTAACCGAGGGTACAACACCGCGGCCGCACTCACCAGCCACATGCAGAACCACAAGAAGTCCTCCGACACCCCCTCCCCCTCGCCTGGCTCCACGTTCAAGTGTCTCCAATGTGCCGAGGTGTTTCGGAAACCTGAGGACCTTCAGGCTCACATGGTCTCCCAACACAATGTGGAGGCTGGAGGCACTCCACCTGTGGCTCCTTCACCCAGACGTCCCCGTCTTTCCCCCCACTACCCCTCTAGCCACCGCTTGGCCTGCATGTATTGTACCAAGGACAACTTCAATACCATGGAATCGTTGCAGCTCCATGTACAGGCTATGCATGGATCTATTCTAAATGGAGAGCTACAGAGAGACTTAGCTATGTTCTCTCCTCAGGCATCGCCTAGTCCGAGTCTCCTCTCACATCCTATGTTGTCCACCCCAACATCTCCGTCTCTGCCTTACTGCTGTGATCTGTGCACAATGAGATTTCACTCTATCTCGGCCCTACAGAAACATGCACTAACAGTTCATGGGTTTAGAGCGAAGGAGGCAGGCTCTTTGTTCTGTGTTCAGTGTAATCTCCAGTTCCCCACGCCTGCGTTGTTTGCTGAACATTACGTCTTGTTCCACGGCTCTGCGATGGGACTGTTTTCACATTCCCCGGTAGAACAGGTCAAACCAACTGATTTATCTTTAACAAAGAAACCATCTCCAAGGTATACTGAAGACAGACCCCCGTCCAAAAGATCAAGGCATAGCGAAAATGGAATATCCTCGTCTTCCAACGGAGTGGAATCTTCTCGAAGAACGCCGACAAtgAACCACCACCAGTACGAGCATCGAGGTACCTTACTGTGTAACCAGTGTAATGCAGCCATGCCAGACTTTGAGGCATTCAGGAGCCATGTGAAGAGCCACATAGATGAGGCAGGAGGTCTACGGGGTCTACTAGGTGGAGGATCTGAGTCACGAAAAGCCCCTCCGATCATCTGTCCACACTGTGGTGTTCAGTTGGCGTCTCAAGAGGAGCTCCCTCAGCATCTGACCTCACACTTTTTGGCAACAGCAACAGAGTACGGCTGCCAGAGCTGTATGAAACTGTTTTCCAAACCTGATGAGTTACAGAAACACCTTATGGACTTGCATGCCCACCACCTCTATCGGTGTGCGCTCTGCAAGGAGATGTTTGACTCTAAAGTGGCTATCCAGGTTCATTTTGCAGTGAAACATAGCAACGAATCTAAACTTTACCGTTGCACTGCCTGTCCCGCCATGGCGGTCTACCGCTCGGAGATGGACTTCAGCCTTCATGTCAGAACTATGCATACTCCTCAGCACATAGTATCCCCTAAGCCTTCCATTCCTCAGTCGCCACAGATGTTCCGGTGTCTGTTCTGCCGTCTGAGTTTTCCCTCCGAGTTGGAGATGCAGCTTCATTTGCCTGTTCATACCAAGCAGTTCCACTGCCATCTATGCCAAGAGTCCTTTCACATAGAGTTCCTTCTCGATAAACATCTACAGACCCATCATTCAGCACAGgTTTTAAATGGTGTGGAAGAGATGGAAAGTCCACGATCAATGAAGGGAGGAAATAAAACTCCTTCTTCAAACCACACCAACAGCCTGAGTCGGACTAATGGAAATATCTCAGAGACCAACAAGAAACAAGATTCAGCGAACAACAATATTGTCAGTGCTTGTGAAATTTGTGAGAGGAATGACTTTGCAAGTGAGGCTGAACTAGCGGCCCACCGTAAACTTGTTCATCACATCAAAGGCTCCTCCACTGGGAAGTTAAGCCTGAACTGTGCATACTGCAGCGAGAACTGTAAATCCCGCTCTGATTTGGAAAACCATATGAAGAGCCATTCACAAGGCTGTGTCTCTCAAGGCAAACACAAGTGCAACATCTGCGATGAAATGTGTGCTTCTGCAGCCATTTTAGCTGAGCACAAACTCACCCATTGCAAGGTAATCAACGGAACATCATGCACCCAGTGCAAGGCAGCTATTACAAACGAAGACCAGTTCTACCAACACCTGCGCCAACACAGCATCAGTTCACCTGGAGGCAATGGCAGTCCTACCAACCAGCTTGTGTTGCCCACCGGATGTGTAATTTGTCGACAGACATTAGTCTCAGACATGGAGGCAAGGATTCATGCCCGGTTTCATCTCACTCCCATAGACATGTCACCATGCTCCATGTGCCTACAGGCATATGATCGACGAGACCTTGCAGGTGGGGTCTGCAAGGAGTGTATCCGCCGTCATGGTAGTGGGAAAACTTCACCATCTCGCTGTGTCGAGTGTCAGCTCAAATTCGAGACTGGACCAGCTTTGGAGGCTCATATTGCTTCGGTGCATAGGAAAGCTTTTCAATGCATCAAGTGCCAGGTAAATACAATGTGCTTGTAG
- Protein Sequence
- MRGADVIIGLTKTHSEHMPFRCEFCSRLFKHKRSRDRHIKLHTGDKKYRCTQCDAAFSRSDHLKIHMKTHDNQKPFQCTVCNRGYNTAAALTSHMQNHKKSSDTPSPSPGSTFKCLQCAEVFRKPEDLQAHMVSQHNVEAGGTPPVAPSPRRPRLSPHYPSSHRLACMYCTKDNFNTMESLQLHVQAMHGSILNGELQRDLAMFSPQASPSPSLLSHPMLSTPTSPSLPYCCDLCTMRFHSISALQKHALTVHGFRAKEAGSLFCVQCNLQFPTPALFAEHYVLFHGSAMGLFSHSPVEQVKPTDLSLTKKPSPRYTEDRPPSKRSRHSENGISSSSNGVESSRRTPTMNHHQYEHRGTLLCNQCNAAMPDFEAFRSHVKSHIDEAGGLRGLLGGGSESRKAPPIICPHCGVQLASQEELPQHLTSHFLATATEYGCQSCMKLFSKPDELQKHLMDLHAHHLYRCALCKEMFDSKVAIQVHFAVKHSNESKLYRCTACPAMAVYRSEMDFSLHVRTMHTPQHIVSPKPSIPQSPQMFRCLFCRLSFPSELEMQLHLPVHTKQFHCHLCQESFHIEFLLDKHLQTHHSAQVLNGVEEMESPRSMKGGNKTPSSNHTNSLSRTNGNISETNKKQDSANNNIVSACEICERNDFASEAELAAHRKLVHHIKGSSTGKLSLNCAYCSENCKSRSDLENHMKSHSQGCVSQGKHKCNICDEMCASAAILAEHKLTHCKVINGTSCTQCKAAITNEDQFYQHLRQHSISSPGGNGSPTNQLVLPTGCVICRQTLVSDMEARIHARFHLTPIDMSPCSMCLQAYDRRDLAGGVCKECIRRHGSGKTSPSRCVECQLKFETGPALEAHIASVHRKAFQCIKCQVNTMCL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -