Sbis096505.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stictocephala bisonia
Gene Symbol
RTase
Assembly
GCA_035578905.1
Location
JAQJVL010001356.1:191439-204584[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.032 13 9.4 0.3 1 23 336 358 336 358 0.98
2 10 0.00033 0.13 15.7 0.8 1 23 364 386 364 386 0.96
3 10 0.0092 3.7 11.1 1.3 1 23 392 414 392 414 0.98
4 10 9.7e-05 0.038 17.3 3.1 1 23 420 442 420 442 0.99
5 10 0.032 13 9.4 0.8 1 23 448 470 448 470 0.98
6 10 4.2e-06 0.0017 21.6 0.5 1 23 476 498 476 498 0.99
7 10 0.0003 0.12 15.8 1.0 1 23 504 527 504 527 0.97
8 10 0.0071 2.8 11.5 0.2 1 23 533 555 533 555 0.98
9 10 4.8e-05 0.019 18.3 0.9 1 23 561 583 561 583 0.99
10 10 0.00016 0.062 16.7 0.8 1 23 589 612 589 612 0.97

Sequence Information

Coding Sequence
ATGGCCAGCTACCGACCAATATCACTTATATCCACCTTCTCCAAAATCATCGAAAAAATAGTACTAGAAAGACTTTTACAATATCTTGAACACAATAACCTACTAACTAAACATCAGCATGGTTTCATGAAAGGGCGATCCACAACCACAGCCCTAATACAACTTATAGAACACGTCATAGACAAACTGGAAGAAGGCCTCACTGCCACTAGTCTATTCCTAGACTTtacaaaagcatttgactgcttAAATCACAAACACCTTCTTCAAAAACTAAAAAGCATGGGCGTAAAAGATAAAACTGCAGACTGGTTCTGGAACTACCTGAACAACAGGAGACAATTGGTGGAAATCCAATACACTAAAAACAACGTACTAGAAAAAGTTCAGTCGAAAACTACCGACATACTTAAGAtgggagtgccacaaggatcagtgCTGGGCCCGGTCCTGTTCCTACTGCTTACAAACAACCTGCCCGACTACCTAGAACGCATCTGTCACACAAccatgtacgcagacgacactgTCATAACAATATCTAACAAAACCACGGAACAACTCGCCAGAGGCCTAATCAATACCCTGAACACAACAAAGCAATACTGCATCTCAAACAACTTAGTGCTGAATGACATTAAAACTGTCCAAATAAACTTCTCTACCAGGCACAAAAACATGCATCTTCCAATCACTGACCTGGAAGCAAAAACCCAAACAAATCACCTTGGTATATTAATCGATGAACACATAACCTGGAAAGCACACACTGAACAGCTTTGCAAAAAATTGAGCACCAGCATATTTGTAATACGCAGAATTAAACAGAATAGCAATAAAGACGCAGCTAAAACCGCCTACTTCTCACTTTTTGAGACACACCTTAGATACGGTTTAGCACTATGGGGAGGAACAGCCAACTGCAACATGGAAAAGGTGCAGTTGACCGTGGGTGACTATGAAGTAAACTTGGATGGTTTTGGCAGCTCTCAGAAAGGCAAGATCTTCAGCTGTAGCCGATGCCCTTATGAAGCTGACCGTGAAGACCAGATGATGAAACACATAGAAAAACATACAGGAGATAGGCCGTTCAGGTGTAATTTGTGTCCCTTCAAAACCTTAACAGCCTCTAACTTAACAAAACACATCCGAATACATACGGGTGATAAACCCTACAAGTGCAGTCAGTGCTCGTACACTGCATCACGAAGTGACATTCTGAAGGATCACATGACAAAACACTTGGAGGAAAAACCTTATAAATGTGATCATTGTGATTTTGAAGCAGTGAGGAAAGACTACCTGTCAAGACACATGAAGAAACACACAGGTGTAAAACCTTTCAGTTGTTCGCTATGTTCTTACAGAGCTGCAGAGAGCAATCACATTATAATTCATATGCGAACACACACTGGTGATAAACCgtataagtgtgatgagtgttcaTTTTCAGGTGCACAGAGAAGTGATCTAACCCGGCACATGAGGGTTCATACAGGCATTGCGCCTTTTCCGTGTAACCAGTGTTCCTATAGGGGCAAGCGTGCTACAGATTTGAAAAAGCATATGAGCAAGGTACATTATGATGATAAACCATTCATATGTGACCAATGTCCATTTGGTGCAGATCAAAACAGTGACTTACTCaatcataaaaaaacacatttggcTGAAAAACGTTTCAAATGTAGTGAATGCTCTTTTAGTGCAGCTCAAAGTAGTGATTTAATCAGGCACAAGCGAACACACACAGGCGAGAAACCTTATGAGTGTTCATTGTGTTCTTTCAGAGCAGCACGGAGCAACAATCTACAAAGACATATGCGATTAAGTCacattaataatcaattataa
Protein Sequence
MASYRPISLISTFSKIIEKIVLERLLQYLEHNNLLTKHQHGFMKGRSTTTALIQLIEHVIDKLEEGLTATSLFLDFTKAFDCLNHKHLLQKLKSMGVKDKTADWFWNYLNNRRQLVEIQYTKNNVLEKVQSKTTDILKMGVPQGSVLGPVLFLLLTNNLPDYLERICHTTMYADDTVITISNKTTEQLARGLINTLNTTKQYCISNNLVLNDIKTVQINFSTRHKNMHLPITDLEAKTQTNHLGILIDEHITWKAHTEQLCKKLSTSIFVIRRIKQNSNKDAAKTAYFSLFETHLRYGLALWGGTANCNMEKVQLTVGDYEVNLDGFGSSQKGKIFSCSRCPYEADREDQMMKHIEKHTGDRPFRCNLCPFKTLTASNLTKHIRIHTGDKPYKCSQCSYTASRSDILKDHMTKHLEEKPYKCDHCDFEAVRKDYLSRHMKKHTGVKPFSCSLCSYRAAESNHIIIHMRTHTGDKPYKCDECSFSGAQRSDLTRHMRVHTGIAPFPCNQCSYRGKRATDLKKHMSKVHYDDKPFICDQCPFGADQNSDLLNHKKTHLAEKRFKCSECSFSAAQSSDLIRHKRTHTGEKPYECSLCSFRAARSNNLQRHMRLSHINNQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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