Sbis075136.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stictocephala bisonia
Gene Symbol
Clamp
Assembly
GCA_035578905.1
Location
JAQJVL010000575.1:399508-403758[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 7 1.5e-05 0.0058 19.9 2.9 1 23 168 190 168 190 0.99
2 7 2e-05 0.0081 19.5 1.2 1 23 326 348 326 348 0.98
3 7 4.5e-07 0.00018 24.7 0.3 1 23 354 376 354 376 0.99
4 7 1.9e-06 0.00076 22.7 1.6 1 23 382 404 382 404 0.99
5 7 8.6e-07 0.00034 23.8 1.9 1 23 410 432 410 432 0.99
6 7 2.4e-05 0.0094 19.3 1.0 1 23 438 460 438 460 0.98
7 7 0.0001 0.041 17.3 0.9 1 23 466 488 466 488 0.97

Sequence Information

Coding Sequence
ATGGCACTTGAGTCAAACGGTACATGGATTACTCAGGAGCAGCATAAGAGTAATGACCAGCATGTGTATGTGACCGAGTCTGTTCACCCCAGACCACCCCCTAAAGTCTCCAACAAACAACACACTCAAACTGAGAGATTTACACAAACGGAATACAGAGGTAACTGCGTAGAAGTGGTGGCTGCTGTTAGCCCCAAAGACGCTGTGATGTTTGAGCAAACCATACAGCACCATCAGCCTGTGCAAATGTACTCCACTATAGAGAAGAAGGACATTGCCCCAGATAAGGGGAGTAATGTCACAGAGTTCCCTTTTTGCTATAATGTCAATATGTTGCAGAAGGTTCACCAGACTCAAGCCAGTAGCCCCACCACTACAGCTGTAGCCAGTATAACAGCAGATGACAAGACTTGTTACAGGCTTGACGTAGGTCAACCGTTTGGATACAACTACGCACTAGTTAATCAGATGTCATTAGCAGCTGCCGCGTCTACCGCTACTTTTAAGTGTGAGACTTGCGGTTTGGTGTTTGCTCATCTTTCTTTACTTAATCATCACAAACGTATTCACAGCGACGATAACCTCTCACCTGAAAGGACATTCCCTAATGAACAAACAAATGAGATAAAAGTCCAGCTAAAAACAGCAGCAAAATCACGAAATTGTAACAGATGTGGAGGGGAAGTCGTTGGCTGTGAGCATTCTAACAACAGCAAGAAAAAAGTCTCAAAATTTGTCAAGTGTGAAAACTGCCAAACTGGTCCTGCATCAACGACAACTGCTACTAATGGCTCAATTTCACCATCACCACACGACCCAACTGAGAGCATACCAGAAATTATAAACATCCCAAATAAGGGCTTGCATTTGGTTAAACGTCACAATGGTGTAGCTACCATAACGAAGTGTCACAAATGCAATGGCTCGGGAATTATATTTATAGGAGGTAAAAGTCCGCCGACAAGTGACAAACCTTTTCGTTGCAATGTGTGCGATGGTTCTTTTTCTAGATATTCTTCGTTATGGAGTCATAAAAGACTTCATACTGGTGATAAACCTTTCAAGTGTGAAATGTGTGGGTTAACATTTGCAAGAGCAGCATACTTGAAAAATCATCTTAGAGTGCATAGCGGGGAAAAACCGTATAAGTGTAATGTGTGCGGAATGCAGTTTTCACAATCTCCCCATTTAAAAAACCACGAAAGAATTCATAGTGGTGAAAGACCTTATCAGTGTGAAGTTTGTGAAAAAACATTTGCACGTCATTCAACACTGTGGAACCACAGACGAATACACACGGGTGAAAAGCCCTATCGATGCTCAGTCTGTGGATCAGCTTTCAATCAAGCAACCCACTTGAAGAATCATGCCAAGGTCCACACAGGAGAAAAGCCTCACCGTTGTGATATATGTGAAGTTGGATTTTCAGATAGATTTGCTTTAAAGAGGCATAGGCTAATACATGAGAAATATTGTCGTACGTCTTCCAATAATTCTCAGACTCAAATTCAACCATCTCAGTCGTCAACAAGCTCCCAAAATCAACAATCTACATCACAGCTGGAGATGTACAAGTGTGAAGTTGCCTTTCCTGGACAACAGCCTAGTGTATCAACAAATCCTCAGCAACAACCCCAAGAAACGGACCCAATAGAATTCTACAAATGTGACGTAGCCTCTACTGTAGCTTTCCCAGGATCAGAACAATCAGTTCAATCTAACTCCACAAGGTCTTCACAGCAGCAAAGTGACATATACAAATGTGATGTTGGGACATCCGTTTCATTTTCAGCTCAGCAGCAACAGACTCAGCAGGCTACATCAGACGATCCTCCCTCCTCATCACAAAATCCAATAACGGAAGTTTACAAAGTGAGTGTCGGTAATAGTACTTCTCTTCCATTTCAAAATCAATCTCAGCAACAAACAAATCAGATCAGTGTGTACAAATATGAAGTCGGTGCTTCAGTGCCATACTCTAACCAGGGACAACAATCTCAGCAATCTACATCACAAACTCCTAGTTCCTCAGCGCCACCTCAGCAAATTGCACAATTAGATGTTGGGTCTTCCACTGTTGATTTTCCTGGACAGAATCAACAAACTCCACAACAGACTTCACTCTCCACTCCTCAACAAATGTCAGTAGCCAAGATAGGTTCAAGTTCCTACTCAGAAGATCACGATGGAGATACTATTTTAGGGGGGCCCTAA
Protein Sequence
MALESNGTWITQEQHKSNDQHVYVTESVHPRPPPKVSNKQHTQTERFTQTEYRGNCVEVVAAVSPKDAVMFEQTIQHHQPVQMYSTIEKKDIAPDKGSNVTEFPFCYNVNMLQKVHQTQASSPTTTAVASITADDKTCYRLDVGQPFGYNYALVNQMSLAAAASTATFKCETCGLVFAHLSLLNHHKRIHSDDNLSPERTFPNEQTNEIKVQLKTAAKSRNCNRCGGEVVGCEHSNNSKKKVSKFVKCENCQTGPASTTTATNGSISPSPHDPTESIPEIINIPNKGLHLVKRHNGVATITKCHKCNGSGIIFIGGKSPPTSDKPFRCNVCDGSFSRYSSLWSHKRLHTGDKPFKCEMCGLTFARAAYLKNHLRVHSGEKPYKCNVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCSVCGSAFNQATHLKNHAKVHTGEKPHRCDICEVGFSDRFALKRHRLIHEKYCRTSSNNSQTQIQPSQSSTSSQNQQSTSQLEMYKCEVAFPGQQPSVSTNPQQQPQETDPIEFYKCDVASTVAFPGSEQSVQSNSTRSSQQQSDIYKCDVGTSVSFSAQQQQTQQATSDDPPSSSQNPITEVYKVSVGNSTSLPFQNQSQQQTNQISVYKYEVGASVPYSNQGQQSQQSTSQTPSSSAPPQQIAQLDVGSSTVDFPGQNQQTPQQTSLSTPQQMSVAKIGSSSYSEDHDGDTILGGP

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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