Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010000506.1:308454-309521[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 7.6e-05 0.03 17.7 1.1 1 23 75 97 75 97 0.98

2 9 0.00075 0.3 14.5 3.0 1 23 102 125 102 125 0.94

3 9 0.0061 2.4 11.7 0.6 1 23 146 168 146 168 0.95

4 9 0.00085 0.34 14.4 0.1 1 23 174 197 174 197 0.92

5 9 9.5 3.8e+03 1.6 1.3 1 20 211 230 211 233 0.63

6 9 0.00065 0.26 14.8 0.2 1 23 237 259 237 259 0.98

7 9 3.2e-06 0.0013 22.0 0.5 1 23 265 287 265 287 0.98

8 9 6.7e-07 0.00027 24.2 6.8 1 23 293 315 293 315 0.99

9 9 1.6e-05 0.0064 19.8 0.2 1 23 321 343 321 343 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	7.6e-05	0.03	17.7	1.1	1	23	75	97	75	97	0.98
2	9	0.00075	0.3	14.5	3.0	1	23	102	125	102	125	0.94
3	9	0.0061	2.4	11.7	0.6	1	23	146	168	146	168	0.95
4	9	0.00085	0.34	14.4	0.1	1	23	174	197	174	197	0.92
5	9	9.5	3.8e+03	1.6	1.3	1	20	211	230	211	233	0.63
6	9	0.00065	0.26	14.8	0.2	1	23	237	259	237	259	0.98
7	9	3.2e-06	0.0013	22.0	0.5	1	23	265	287	265	287	0.98
8	9	6.7e-07	0.00027	24.2	6.8	1	23	293	315	293	315	0.99
9	9	1.6e-05	0.0064	19.8	0.2	1	23	321	343	321	343	0.97

Sequence Information

Coding Sequence: ATGCCAGATATGATTTCTTTGCCAATGAATGAAGACAATGGTGAAACAGCAGTTGAATTATACGAAGACGTTGAAACTTCTGTTGTAGTCCACAGCTTGGTGGAGGGTTTAGAGGATGGTGAATATATTGCCTACATCACCGATGATTTTGTAGAATCATCAGTCGAAGTCATGGGTGAAGAACTGGAAGAAGTTTCTGAAATCGGAATGGATGCAAAACCATATATATGTGAAACTTGTAATAGAATTTTTACTGATATAACTATGTTTAAAACTCACTTAAATACACATAAAAGTAAGGGACATTTTTGCAAGTATTGCGATGTATATTACAAACGAATAGACCATCTTGAGAAACACATCGAAATTATGCATCCTGCTTTTAGTAAAACAATGGTGCCAAGGGAAAAAAAAGTCAATCCTTATGCCAAAACATTTCTTTGTAATACTTGTGGGAAGATCCTAAAAAGTAGTTTAGCTTATGAAAATCACACGTTGAAACACCAAAGCAAGTGTCCTTTTCCTTGTGATATTTGCCCTGAGACATTCCCCAACAGAGGAGCAAGGAGAAGACACGAAGTTAAAGAACACAATTTGTTCACTAAAGAAAATGGTAATCCTGACGGTTATCACGTTTGTGAAGTGTGTGGACTCGAGATGTTCTCCGATGGTGCTTACTATCACCACAAAGACAAACACGGAGACCCTTATCCCTGCGGGTTCTGCGGGAAGTTGTACGGTAGTAGAAGCCTCATGCAGGTTCATGCTAGAAGACATACCAATGAGAGACCTTTTGTTTGTTCACTATGTAAtagaaattttaaagtaaaacaagaGCTTAATGCTCATATGAATATACACAAGGATCTAAGGCCGTACCAGTGTCCTCACTGTCCTAAAATGTGTCGGAAAAGTTCAGACTTGACTCACCACATCAGGACTCACACGGGTGAAAAACCTTTTATATGTGACAAATGTGGTCGAGGATTTGCCCAGGCTGGAGACATGAGAAAACATAGACAGTTGCATTTTCGACcttcaaaaataaacaaaggtcTCACAGCATAA
Protein Sequence: MPDMISLPMNEDNGETAVELYEDVETSVVVHSLVEGLEDGEYIAYITDDFVESSVEVMGEELEEVSEIGMDAKPYICETCNRIFTDITMFKTHLNTHKSKGHFCKYCDVYYKRIDHLEKHIEIMHPAFSKTMVPREKKVNPYAKTFLCNTCGKILKSSLAYENHTLKHQSKCPFPCDICPETFPNRGARRRHEVKEHNLFTKENGNPDGYHVCEVCGLEMFSDGAYYHHKDKHGDPYPCGFCGKLYGSRSLMQVHARRHTNERPFVCSLCNRNFKVKQELNAHMNIHKDLRPYQCPHCPKMCRKSSDLTHHIRTHTGEKPFICDKCGRGFAQAGDMRKHRQLHFRPSKINKGLTA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -