Sbis085631.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- ZEB2
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000881.1:142396-148097[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 6.8 2.7e+03 2.1 1.2 2 23 119 141 118 141 0.78 2 14 0.13 52 7.5 1.0 2 23 182 204 182 204 0.96 3 14 0.011 4.4 10.9 0.2 2 23 208 230 208 230 0.96 4 14 0.0011 0.42 14.1 0.2 2 23 233 254 232 254 0.95 5 14 2.3e-05 0.0091 19.3 1.1 1 23 260 282 260 282 0.97 6 14 2.2e-07 8.9e-05 25.6 1.4 1 23 288 311 288 311 0.97 7 14 7.3 2.9e+03 2.0 3.5 5 23 324 342 322 342 0.93 8 14 0.0013 0.5 13.8 4.1 2 23 348 370 347 370 0.96 9 14 0.09 36 8.0 1.4 2 23 385 405 384 405 0.96 10 14 7.8e-05 0.031 17.6 1.1 1 20 411 430 411 433 0.92 11 14 0.00083 0.33 14.4 4.3 1 23 441 463 441 463 0.99 12 14 0.00039 0.16 15.4 4.2 1 23 469 491 469 491 0.97 13 14 3.5e-05 0.014 18.7 6.3 1 23 497 519 497 519 0.98 14 14 0.0026 1 12.8 9.3 1 23 525 547 525 548 0.96
Sequence Information
- Coding Sequence
- ATGCAACCTATGTCTCAACAAGACAAAGCTCTGGCGCACAACGGCCAAGCTACCGTTGTCTTTCTTAGTGGGTACTTCCCAGGTAGAGTAATAGCCACTAACGAAAATGTATCTTGGCTTGCAAGGTCACTGGACCCAACCTCACTAGATTTCTTTGTGTGGGATTACTTGAAGGTCAACCTGTATACCCTGTTAAGTAATTTGGTGGAAGAAATGTGCAACAACACACAAGAAAAAGTTGATGGACATTTTGCAAACATTCACCATAAAACGTTAACAAGGGCTGAACCACAACCATCTGCAGCTGGATCAGAAAGATGGCACCTGGATGTGAGTGGCAGCTACTCAAGCATACGGTGTTTCGAGTGTGACGTGACGTTTGACTGTGTCAAGGAGAGACGTATCCACGTTCAAACAGTGCACAAGACACCACAACACACTCAAGTCAAAACTGAGGGAAAGTCGAGACATTATTTGAAGAAGGCTGAAATAGTTAAGGTCAAGCAagaaaaacttaatataaaatcaGAAACTAATGCGAGAACTTGTGTTGAATGTGGACTAGAATTACAGTCAATTAAACAGCTTAAGAAACACAAAAAGAGTTTCCATGATAAGAGAAAATGTGGAACATGTGATATGGTGTTTAACGATAGTGTTACACAAAAAGATCATATAGCCAAAGTTCATCCTATTGAATGCAATATATGTGGCAAACTTTTTACAACCAGGACTGCAGCAAATGCACattcaaaaaatcatttaaaattaaagccTTTTAAATGTACTGTTTGTGATAAGTCATTTGTATCACGAATGAAGCTAAATGATCACAACAATATTCATTCAGGTGAAGCTCCTTACAAGTGTCCCATGTGTAATCTCTCGTTCAAACGACAATCTAATTTAATTCAACACAAGAACAGCCTCCATTTGAAAGTGAAGAGGAAAATTAAAGATTATTTCTGTCATTGTGGTGAAATATTCCACTCTATTAAAAAACTCCAATGGCATAAAGAATTTCATGACCCAAAGCCTAAACAATGTATGTATTGTAGTGAACGATATGTTCACTCCACTAGTCTTACGAGACATATTAGGCATGCTCATGACAGCACTTATCTTCCAAAGCCGACTACCTCACTCAACACACAATGTCCAGTGTGCAAAATTACCTGTATAAAGACATCCCTAGCACAACACATGAAGTTACACACAGGAGATAGGCCATTTCAATGCAATGTTTGCTCTAAGGACTTCAGTACTAACTGGAACTTGCAAATGCACAAATGGACTCACGCATCTCGAAACACAAAACCCTTTAAGTGTAAACAGTGTAAGTGTGCGTTCTATATATTGAGTAGTTACCAGGCCCATATGAGATCCCATCGGAACATCCGCCCCTACACATGCAACTATTGTGGCCGTCAGTTTATTCGCAAGTATAACTGTGTACGTCATGTTAAAGAGCATGAAACTAAGAAGTCCTATTGCTGTGCTGTCTGTAACAGAACTTTTCATCGTAGTTATTATTTGACTGAACACATGCGAACTCACACAGGTGTTAAACCGTATACTTGTCATATATGTTCAAAAACATCTACTACTAAATCTAATCATAACAAACATGTGAGGACTCATCATGCTCGTGAGCCTGTCAATACAGAAGGTTAG
- Protein Sequence
- MQPMSQQDKALAHNGQATVVFLSGYFPGRVIATNENVSWLARSLDPTSLDFFVWDYLKVNLYTLLSNLVEEMCNNTQEKVDGHFANIHHKTLTRAEPQPSAAGSERWHLDVSGSYSSIRCFECDVTFDCVKERRIHVQTVHKTPQHTQVKTEGKSRHYLKKAEIVKVKQEKLNIKSETNARTCVECGLELQSIKQLKKHKKSFHDKRKCGTCDMVFNDSVTQKDHIAKVHPIECNICGKLFTTRTAANAHSKNHLKLKPFKCTVCDKSFVSRMKLNDHNNIHSGEAPYKCPMCNLSFKRQSNLIQHKNSLHLKVKRKIKDYFCHCGEIFHSIKKLQWHKEFHDPKPKQCMYCSERYVHSTSLTRHIRHAHDSTYLPKPTTSLNTQCPVCKITCIKTSLAQHMKLHTGDRPFQCNVCSKDFSTNWNLQMHKWTHASRNTKPFKCKQCKCAFYILSSYQAHMRSHRNIRPYTCNYCGRQFIRKYNCVRHVKEHETKKSYCCAVCNRTFHRSYYLTEHMRTHTGVKPYTCHICSKTSTTKSNHNKHVRTHHAREPVNTEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -