Sbis071285.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000498.1:322727-323995[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0089 3.5 11.2 3.0 1 23 101 123 101 123 0.94 2 11 0.039 15 9.2 1.4 2 23 127 149 126 149 0.95 3 11 0.00013 0.053 16.9 1.5 1 23 154 177 154 177 0.96 4 11 1.1e-05 0.0043 20.3 0.3 3 23 186 207 184 207 0.94 5 11 0.22 86 6.8 1.1 2 23 214 236 213 236 0.94 6 11 9.5e-07 0.00038 23.7 2.1 2 23 246 267 245 267 0.97 7 11 0.00011 0.045 17.1 0.4 3 23 274 295 273 295 0.97 8 11 7.6e-05 0.03 17.7 1.4 1 23 301 323 301 323 0.98 9 11 0.0029 1.1 12.7 0.8 3 23 333 353 332 353 0.97 10 11 5.3e-07 0.00021 24.4 0.4 1 23 359 381 359 381 0.99 11 11 0.043 17 9.0 0.6 1 20 387 406 387 408 0.88
Sequence Information
- Coding Sequence
- ATGGAAAATGTTTTTGTTCAAATTGCAGTTCCAGAAACAGATCTTCCAACCTACAAATACTCTGCTAGTAGCATTTCAAAATCCAATAgcaatggaaataaattaaaaagaagctGTCAGAAGCAGGGAAAAATCCAACACAAAGTAAAAAGTGCTCTGCTTTCAAAAAAAGAATGCATAGAAAACAAATTATCTCAAAGAgttgataaaatacaatttgaaaatgaattattttgcaTAGTTTGTAATCTGAAATTTAGTTGCCATGAATCTCTAAAAGACCATAAAgatgaaaatgtttttttgtgTAGATTGTGCACAGAAGAATTTAAGACCCATGATGATCTGGAAAATCatttttttacccataaaaaaatTAGGTGTAAAGTATGTAAAGAAGAATTCTTTGGCAGAAAAGACCTTTTTCTGCACAAATCTAAAATGCACACTGCCAGGAAATTCGAATGTACAGCATGTCTTAAAAGTTTTACTACGCGTTATGACATAAACAGACACATGAATCTCTTTCACAACGGTGTTGATAGCAGTTACGGATGTGCTGTTTGTGGAAAAAGCTTCAAGGTTAAATATCAGTTAAAACAACATCTTTTACAGGCTCACGTAGTGTATGAACATTTAGAATGTAAATTTTGCCACATGATGTATTTAGGTCCCTACAAGCTACAATCGCACATTAAACAAATTCATCTTGATTCAGAGGAAAACTCTCCAGTCAGTTGTTCAACTTGTGGAAAAGTGTTTAAAAAAGCCAAACATCTTATTAGGCATCAAGAAACACACGATAACATAGAAAGTTTGTGTGAGATATGTGGAAAATCAATTAAGACTAAAAGTTTAATGCTAAGTCATATGCTAATGCAGCATTCTAAAACTGGAACATTTACATGTAGAATATGTAATGAGCAGTTTGGTGTTAAGAAAGAGCTTCAAATGCACCAACGAAAACATGCCCAAAAACGGTCTACAACTGTGTTCTGTGAAATTTGTGGGAAAGAATATAAAAATTCGCTGATTTTAAAAAGGCACAAGGAAACGCATGCAGATGAAAGGCCTTTCAAGTGTGAGGTTTGTGGTGCTACATTTAAGCAATCTGTTGCTCTGCGAACTCATCGCAGAGTTCATAGCAGTGTTGATAAATATACTTGCAGTGGTTGCGGAAATACTTTCAGGTGGAAACAGACCTTTGACAAGCATCTAATCAAGTGTAGAACtgatgatagtaataataaaaatgttgttgatAAATAA
- Protein Sequence
- MENVFVQIAVPETDLPTYKYSASSISKSNSNGNKLKRSCQKQGKIQHKVKSALLSKKECIENKLSQRVDKIQFENELFCIVCNLKFSCHESLKDHKDENVFLCRLCTEEFKTHDDLENHFFTHKKIRCKVCKEEFFGRKDLFLHKSKMHTARKFECTACLKSFTTRYDINRHMNLFHNGVDSSYGCAVCGKSFKVKYQLKQHLLQAHVVYEHLECKFCHMMYLGPYKLQSHIKQIHLDSEENSPVSCSTCGKVFKKAKHLIRHQETHDNIESLCEICGKSIKTKSLMLSHMLMQHSKTGTFTCRICNEQFGVKKELQMHQRKHAQKRSTTVFCEICGKEYKNSLILKRHKETHADERPFKCEVCGATFKQSVALRTHRRVHSSVDKYTCSGCGNTFRWKQTFDKHLIKCRTDDSNNKNVVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -