Sbis089153.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010001007.1:91819-102340[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 0.0026 1 12.8 0.5 3 23 142 162 140 162 0.96 2 16 1.5e-05 0.006 19.9 0.6 1 23 168 190 168 190 0.97 3 16 1.4e-05 0.0055 20.0 2.2 1 23 196 218 196 218 0.98 4 16 0.00033 0.13 15.7 0.5 1 23 224 246 224 246 0.97 5 16 0.4 1.6e+02 6.0 2.0 1 23 252 274 252 274 0.98 6 16 2.8e-06 0.0011 22.2 0.8 1 23 280 302 280 302 0.97 7 16 0.00054 0.22 15.0 1.5 1 23 308 330 308 330 0.98 8 16 3.2 1.3e+03 3.1 1.5 2 23 338 359 337 363 0.91 9 16 0.041 16 9.1 5.1 1 23 424 447 424 447 0.92 10 16 0.17 68 7.1 1.6 2 19 449 466 448 469 0.91 11 16 0.00031 0.12 15.7 4.6 1 23 495 517 495 517 0.98 12 16 0.072 29 8.3 0.8 3 23 525 545 523 545 0.97 13 16 1.5e-05 0.0058 19.9 0.3 1 23 551 573 551 573 0.98 14 16 0.39 1.5e+02 6.0 3.5 1 23 579 602 579 602 0.92 15 16 0.15 58 7.4 1.4 3 23 610 631 609 631 0.94 16 16 2.6 1e+03 3.4 0.3 3 23 638 659 637 659 0.81
Sequence Information
- Coding Sequence
- ATGGCAGATGTCATACAAGATATTGGCGTTTTCAACGTCAAAGATGAATTAGTATTTGTTGATGaagttttttgtttgaatttaaatgaaGAGATAGTTATTGAATCAACAGAAAACGGAAGTgaaagtaatgtgagtgagagctcttattattgTACAGAATCTACATCAATTTCTGAAAGTACTGAACCCAGCACAGATTCCAATGAAAACATTTCTGgatcaaatataataaaagaagATAATGAAAGCAATAAATTTAGTCCTGAGTTAAGGTTCACTACTGAAAATGTTCAATCAACATCTTCTGAAGAATTTGATTATTTCAAATGCAGTAAGGAGAGTTCAGAGAGccATTTGGAGGATAGTCACAATGAAGTAATTGAGGAGCGAACAGAGAATAGTGGCAAAAGAACATGGGCCTGCAAGCAGTGTGACAAGACATTTATATCTCGTAAGGGTTCAGTGATCCATTTACGGACACATACGGGAGAGAGGCCATTCACATGTAAGGTTTGCGCCAAGCGCTTCATAGATAGTAGCACACTTATGAAGCATCAGGTCATCCACCAAGACACTCGGCCATTCACATGCACCATCTGCCATCGAGGATTCAATCAGAAAGTGGCATTACAAAGGCATGAATCCACCCACTCTCTGCAACCCTTATTCACTTGTAAATACTGCCCAAAAACGTTCCTCGTTCGTAGTAGCTTACTAGCTCATGAAAATATTCATTCCCGTATAAAACCCTATGTCTGTGGATTTTGCCCAAGTAGATTTCATACTTTGACTCTTCAGAAACAGCACGAACGTGTCCATACAAATGAAAGGCCTTACCAATGTAATTTCTGTCCAAAAGCATTTAAAGACAGTGGTACTTTATTCAAACACCAAGTAATACATTCAGGGGTGAAGCCTTACTGCTGTCCGTTGTGCTCCAGTGGGTTTACTCAGAAAGTAGCTGTTAGGAAACACATCAGATCTCATGTTTTGAAGACTTTCTCCAATCAATGTCCAATTTGTAAAATCACTGTGCTAAATCAAGATCAGTTGTGCTTTCATTTAGAAAAACATGTGTTAGAACATTCccaaattgtaaataaatctCTTTCAAAATCAGAGCCTGATTTTAAGAGTAAAAAGTGTCATTCCGATGTTAAGTTTATTGAATCTGATCTCAGCGACTTAGCCACTTTGTGTGATGTTGCAATTTCAACATCAGGAAACTATTTTCCTGAAATTAACCCTAATTCTGTAAGGGGACGATTCTGTTGTTTCTACTGTGGGATGCGGTACAAACGTGAGAGAACACTTCACTCTCACCTCACAGGTGTGCATCTGTATTGTATGCTGTGCAGTACAAAATTTTACGATAGAAAAGATCTTGAAGCTCACAATTGCAAAGAGAAAGACAACTACAgcaataatattttgtgtaagCCAAATGGAAGGCAGAAATTTAAATCAGGGAATCGACAGTTTTACTgtgaaaaatgttcaaaatgtttcAACTCTAGAAATGGTTTTGTTATTCATCAAAGAAGTCACACAGGGGAACGCCCATATGGTTGTAGATGGTGTGAGAAGGCTTTTGGGGATTCAGCGACCAGACACAAGCATGAGAGGATCCATACTGGAGAACGCCCGTTCAAGTGCACCAGCTGCCCAAGAGCCTTCAATCAGAGAGCAGCATTGCGAGCCCATCAAGTTACACACAGCTGTGATCGAGCCTTTACATGCCAACATTGCCCTTCTTCTTTTCTGTATGCAACTACTCTCCGTAAACATGTTGAAGCGTGTCATGCTGATATTTTAGAGGTGGCTTGTCCACTATGTGCAAAGAAATGTCCTAACTCTATTACTCTTCATAGTCATATTACGCAAGCACATGAAAGAGAAACCCAAGTGTGTGCTTTCTGTGATTCTGGAGTTTTTTCAAACAGTAGTGAATATTGTGACCACTTAGTTTGGCACGCTAAGCAGCATGTATTGGATGATTATGTAAAAACTAAAAGTTCTAaacttataaaagaaaataataaactaagCCAGACTGTGTCTCGGATAATAAAACAGTCTactaattaa
- Protein Sequence
- MADVIQDIGVFNVKDELVFVDEVFCLNLNEEIVIESTENGSESNVSESSYYCTESTSISESTEPSTDSNENISGSNIIKEDNESNKFSPELRFTTENVQSTSSEEFDYFKCSKESSESHLEDSHNEVIEERTENSGKRTWACKQCDKTFISRKGSVIHLRTHTGERPFTCKVCAKRFIDSSTLMKHQVIHQDTRPFTCTICHRGFNQKVALQRHESTHSLQPLFTCKYCPKTFLVRSSLLAHENIHSRIKPYVCGFCPSRFHTLTLQKQHERVHTNERPYQCNFCPKAFKDSGTLFKHQVIHSGVKPYCCPLCSSGFTQKVAVRKHIRSHVLKTFSNQCPICKITVLNQDQLCFHLEKHVLEHSQIVNKSLSKSEPDFKSKKCHSDVKFIESDLSDLATLCDVAISTSGNYFPEINPNSVRGRFCCFYCGMRYKRERTLHSHLTGVHLYCMLCSTKFYDRKDLEAHNCKEKDNYSNNILCKPNGRQKFKSGNRQFYCEKCSKCFNSRNGFVIHQRSHTGERPYGCRWCEKAFGDSATRHKHERIHTGERPFKCTSCPRAFNQRAALRAHQVTHSCDRAFTCQHCPSSFLYATTLRKHVEACHADILEVACPLCAKKCPNSITLHSHITQAHERETQVCAFCDSGVFSNSSEYCDHLVWHAKQHVLDDYVKTKSSKLIKENNKLSQTVSRIIKQSTN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -