Sbis071286.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000498.1:347698-352667[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0001 0.042 17.2 1.4 1 23 22 44 22 44 0.98 2 13 0.0039 1.6 12.3 0.8 3 23 54 74 53 74 0.97 3 13 3.7 1.5e+03 2.9 1.3 3 20 206 223 204 225 0.89 4 13 0.029 12 9.5 2.1 3 23 230 250 229 250 0.97 5 13 0.00041 0.17 15.4 0.4 2 23 282 304 281 304 0.94 6 13 0.077 31 8.2 4.3 1 23 311 334 311 334 0.91 7 13 0.34 1.3e+02 6.2 0.5 2 23 341 363 340 363 0.95 8 13 9.3e-07 0.00037 23.7 0.2 2 23 373 394 372 394 0.97 9 13 7.5e-05 0.03 17.7 0.3 2 23 400 422 399 422 0.96 10 13 5.5e-05 0.022 18.1 1.1 1 23 428 450 428 450 0.98 11 13 0.0019 0.74 13.3 0.2 3 23 460 480 459 480 0.97 12 13 3.9e-06 0.0015 21.7 0.3 1 23 486 508 486 508 0.99 13 13 0.0056 2.2 11.8 1.0 1 21 514 534 514 535 0.92
Sequence Information
- Coding Sequence
- ATGGTTCTTGGCACCTACAAATACTCTGCAAGTAGCAGTTCACAATCTTGTAAAACTGGAACATTTACATGTAGAATCTGTAATGAGCAGTTTGGTGTTAAGAAAGAGCTTCAAATGCACCAACGAAAACATGCCCAAAAACGGTCTACAACTGTGTTCTGTGAAATTTGTggaaaagaatataaaaattcgCTGATTTTAAAAAGGCACAAGGAAACACATGCAGATGATAGGCCTTTCAAGTGTGAGGTGGAATCAACTTCGCTTTCTTTGCCATGCCAGCCTTCtctgaaattattaaataaacgtAAAGATAGCTCTGGAAGAAAGGCATTGCAAGATAATgaactgaaaattaaatttcCTGAACAAGATTCATCTACGGAAAACATCTTCAGACAAATAGCAGGACCAGAAATGGTTTTTGGCACCTACAAATACTCTGCAAGTAGCAGTTCACAATCTTGTAttggtagaaataaaattaaaagaagctGGCAGAAGCAGAGGAAAACCCAGGAAAAAGTAAAAAGTGTTCTGCATTCaaataaagatttacaaaaaaaagaattaacttgTAGAATAGATcaaatacagttaaaaaatgaattattttgcgTAATATGCAATCAGAATTTCAGTTGTCTTGAAACTTTGAAGGAGCATAAAGATAAAAATGGCGTTTTGTGTAGATTGTGCACAGAAGAATTTAAGACTCATAATGATCTAGAAATTCATTTTTCTACTCATAAAAAAATTAGATGTAGAGTATGTAAAGATGAATTTTTTGCCATGAAAGACCTTATTCTTCACAAATCTAAAATGCACACAGCAAAGAAAATTGAATGTACCACATGTCTTAGAACGTTTTCAACACGTTATGGTCTAAGCAAGCATGTGATGCTCGCTCATGGTGAGGATGAAGGCAGTTACGATTGTGTTGTTTGTGGAAAAAGTTACAAGTGctcatttcaattaaaacaacaTCTTGTGCATACTCACATAGTGTACGAACATTTAGAATGTAAATTTTGTCGCATGATGTATTTAGGTCCTTACAAGTTACAAtcacacataaaaaaaattcatcTTGATTCAGAGGAAAACACTCCTGTAAGTTGTTCAACTTGTGGAAAAGTGTTCAATCGAGCGTCACTTCTTGTGAAGCACCTAGAAACTCACGATAACACTGAAAGTGTTTGTGAGTTATGTGGTAAATCAATTAAGACAAAAAGTTTAATGATAAGTCATATGCAAATGCAGCATTCTAAAACTGGAACATTTATATGTAAAATCTGTAATGAACAGTTTGGTGTTAAGAAAGAGCTTCGTATGCACCAacgaaaacatttcaaaaaacgCTCTACAACTGTCTTCTGTGAAATTTGTggaaaagaatataaaaatcCACAGATTTTGAAAGCACACAAGGCAACACATGCGGATGAAAGGCCTTTCAAATGTGAGATTTGTGGTGCTACATTTAAACTGCCTGTTACCCTAAAGACCCACCGTAGAGTTCATAGTAGTGTTGGTAAATACACTTGCAATGGCTGTGGAACTAGTTTTAAATGGAAACAGACTTTTGACAAGCATTTAAACAAGTGTGGGATCAATGAAAGTGGTAGCAAAATAgattttgatagtaaataa
- Protein Sequence
- MVLGTYKYSASSSSQSCKTGTFTCRICNEQFGVKKELQMHQRKHAQKRSTTVFCEICGKEYKNSLILKRHKETHADDRPFKCEVESTSLSLPCQPSLKLLNKRKDSSGRKALQDNELKIKFPEQDSSTENIFRQIAGPEMVFGTYKYSASSSSQSCIGRNKIKRSWQKQRKTQEKVKSVLHSNKDLQKKELTCRIDQIQLKNELFCVICNQNFSCLETLKEHKDKNGVLCRLCTEEFKTHNDLEIHFSTHKKIRCRVCKDEFFAMKDLILHKSKMHTAKKIECTTCLRTFSTRYGLSKHVMLAHGEDEGSYDCVVCGKSYKCSFQLKQHLVHTHIVYEHLECKFCRMMYLGPYKLQSHIKKIHLDSEENTPVSCSTCGKVFNRASLLVKHLETHDNTESVCELCGKSIKTKSLMISHMQMQHSKTGTFICKICNEQFGVKKELRMHQRKHFKKRSTTVFCEICGKEYKNPQILKAHKATHADERPFKCEICGATFKLPVTLKTHRRVHSSVGKYTCNGCGTSFKWKQTFDKHLNKCGINESGSKIDFDSK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -