Sbis044894.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- Zfy2
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000180.1:1426064-1451051[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.0031 1.3 12.6 4.6 1 21 10 30 10 31 0.96 2 12 1.2 4.6e+02 4.5 3.9 1 13 39 51 39 53 0.92 3 12 0.00051 0.2 15.1 0.5 1 22 69 90 69 90 0.95 4 12 0.038 15 9.2 0.2 1 18 98 115 98 115 0.95 5 12 1.8e-05 0.0073 19.6 3.5 1 21 122 142 122 143 0.95 6 12 0.00053 0.21 15.0 0.3 1 15 151 165 151 167 0.91 7 12 0.063 25 8.5 0.6 2 21 175 194 174 195 0.93 8 12 0.00014 0.055 16.9 1.4 1 23 203 226 203 226 0.97 9 12 3.9e-05 0.015 18.6 0.2 1 21 273 293 273 294 0.95 10 12 2.1e-06 0.00085 22.6 3.5 1 23 302 325 302 325 0.98 11 12 0.033 13 9.4 2.7 1 20 342 361 342 363 0.93 12 12 2.4e-06 0.00097 22.4 0.7 3 23 372 392 370 392 0.96
Sequence Information
- Coding Sequence
- ATGTTGTTTTCAGATCAAGAAGAACAGTATCATTGCCCCAGGTGCTTTAAATCTTACCACCGCAAGGGACATCTTGCTCAACATATCAAGTTTGAGTGTGCCACAGAGCCAAAATTCAAATGTCCCTTTTGTCCGAAGAGGTGCGCTCGCAAAACTAGAACTCTCGTCAACGGAAGTGCTAAGTACGAGGGGGAATTTGGCCCTCACCCTTGTCCTCAGTGTGGAAAACTGTACCGCTGGAAAAACAACTTAAACCGACATTTACGGATGGAGTGTGGGAAGCAGCCCAGTTTCAAATGCCCTGGATGTAACTACCTCGCTAGTCAAAAAAGCAACCTCATTCGGCCTGGTGCAGATGGAAAATTTCCATGCCCACAGTGTGGCAGGCGTTACACTCACAAGTCTCACATGAAACGGCACTATCAATACGAGTGTGGCAAAGCACCACAGTTTGAGTGTCCAATCTGCAACCGGACATTCACTCGCAAACACTCCATGTTGTGTTTTGCAGACAGAAATTGGTGTTGTGAGGTTTGTTCACGTGTATACAAGTGGCGCAAGGATTTGCTGCGTCACCAGCAAATTGAATGTGGCAAACAGCCTCGCTTCCAGTGTCCCGTGTGCAGTGCAAGGTTTAAGTATCGCTACTCGATGCGCACACATATTGCTAGAAAACACCCCGCTTCACTGGAAAATCATGATGATTTTAATCATTACGATTATGAAGATGATGCACTGCTAGAAAGCCAGGTTGAGTTCATCGAAGCAATATTTTCCTCAAAAAAAGGCAAGAAGATGCAAGACCCTCTTCTGCAATTTCCTTGTGTGCAATGTGGCAAGGTTTACAAGTACAAGAAGGGGTTATGGGCTCACATGAAGTATGAGTGTGGCAAATCTCCGCAGTTTCAGTgtccaatttgtaaaaaaaagtgcAATCAAAAAAGTAACTTAGTGACACATCTGAAGAAGTGGCACAATTTGGAGTATGAACTGTCATCGGAAGATGGGTTGGAAGGAAAGCAGTACAGCTGTTCTTACTGTAACAAACATTTTGCTTGTGAGCGAAGTGTGCGACGCCATATGATAGAATGTAATTCTCAAGCCATGCTGGACTGCCCAGTCTGCAACTACACAACAAAACGGCGCTACAATCTTGCAAGGCATATGCTGAAACACACCAGTAACCAAATCGCCTCTCCTTTCCTCGATTGTTCCCAATTCCTTGACAAAGATACTGTTTCTTAA
- Protein Sequence
- MLFSDQEEQYHCPRCFKSYHRKGHLAQHIKFECATEPKFKCPFCPKRCARKTRTLVNGSAKYEGEFGPHPCPQCGKLYRWKNNLNRHLRMECGKQPSFKCPGCNYLASQKSNLIRPGADGKFPCPQCGRRYTHKSHMKRHYQYECGKAPQFECPICNRTFTRKHSMLCFADRNWCCEVCSRVYKWRKDLLRHQQIECGKQPRFQCPVCSARFKYRYSMRTHIARKHPASLENHDDFNHYDYEDDALLESQVEFIEAIFSSKKGKKMQDPLLQFPCVQCGKVYKYKKGLWAHMKYECGKSPQFQCPICKKKCNQKSNLVTHLKKWHNLEYELSSEDGLEGKQYSCSYCNKHFACERSVRRHMIECNSQAMLDCPVCNYTTKRRYNLARHMLKHTSNQIASPFLDCSQFLDKDTVS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -