Sbis093934.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010001219.1:54105-70449[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 28 8.4e-07 0.00033 23.8 0.2 1 23 86 108 86 108 0.98 2 28 0.0019 0.77 13.2 0.5 1 23 121 144 121 144 0.96 3 28 0.15 60 7.3 3.0 2 23 151 173 150 173 0.92 4 28 0.001 0.4 14.1 0.2 2 23 254 276 253 276 0.95 5 28 0.041 16 9.1 0.8 1 23 317 340 317 340 0.95 6 28 0.44 1.7e+02 5.8 1.0 3 23 348 369 346 369 0.93 7 28 4.8 1.9e+03 2.6 1.4 1 23 381 403 381 403 0.97 8 28 0.0047 1.9 12.1 0.7 2 23 445 467 444 467 0.95 9 28 6.9 2.7e+03 2.1 3.1 1 23 486 509 486 509 0.92 10 28 0.63 2.5e+02 5.3 0.3 2 23 516 539 515 540 0.90 11 28 0.071 28 8.3 0.1 2 23 549 571 549 571 0.94 12 28 0.0031 1.2 12.6 0.6 1 23 577 600 577 600 0.94 13 28 0.00042 0.17 15.3 3.7 1 23 609 631 609 631 0.97 14 28 7.6 3e+03 1.9 0.2 2 23 662 685 661 685 0.86 15 28 0.006 2.4 11.7 0.4 2 23 689 711 688 711 0.93 16 28 0.0059 2.3 11.7 4.8 2 23 718 739 717 740 0.94 17 28 0.12 46 7.7 5.0 1 21 762 782 762 783 0.88 18 28 0.00018 0.072 16.5 0.6 1 23 804 827 804 827 0.97 19 28 0.24 97 6.6 0.2 1 23 830 853 830 853 0.96 20 28 0.83 3.3e+02 5.0 0.7 2 23 860 883 859 883 0.90 21 28 0.074 29 8.3 0.7 2 23 891 913 891 913 0.97 22 28 0.00026 0.1 16.0 0.5 2 23 951 972 951 972 0.97 23 28 0.13 53 7.5 1.4 1 23 977 999 977 999 0.95 24 28 0.045 18 9.0 4.7 3 23 1048 1069 1046 1069 0.87 25 28 3 1.2e+03 3.2 0.1 2 21 1073 1092 1072 1093 0.91 26 28 0.41 1.6e+02 5.9 0.4 2 23 1170 1192 1169 1192 0.95 27 28 1 4.2e+02 4.7 0.5 2 23 1199 1221 1198 1221 0.89 28 28 0.00012 0.048 17.0 0.5 1 23 1266 1289 1266 1289 0.94
Sequence Information
- Coding Sequence
- ATGACACTTCACTGGTTGATGTTCCTCACTAAAGTTCAATGCTGGGAGCCAGAAGGGCTAGATAAAAAACTGGGTGGGGTGGATCAACTGCATGACAATGTCTTCATCTTGGAGGCCGTTGTATGGTCAGCGTGGAAAGGGAGAAaaagtggctgcccctctgggtcGCAGAGTAGGAGGCTTGGCCCAGCCTGTAGaCGACATTTAGGTGGTGGAACTTTGGCAATGGCTAACAAGAAAGACGCTGTGCGCCTTTTTAACTGCCCGGTTTGTGAAAAGTCATTTGTATCCAAAGGCAATCTATCAAATCACATTAAAGTGCACTCAAGTGAAGGATACCCTCAAGTTACTGACAGGCCATTTCAGTGTGAGCTTTGTAGCAAGTCATATACTGTAGCAAAGCATCTCTGGGGCCATGTCAGCAGTGCTCATCGTGGCGATCCTCGAGTAACCTGCCAGTACTGCTTAAGGATATTCTCCACCAGTCAGAATCTTGACGATCACTGTAAAACCAAACATTCAACTGAATATGTTGAAGCCAAGGTTGAAACTTCCAATGGTGATTCAGTTAAACTTGAAATGATGAGGGAAGATTGTGCTGGTGAGTCTCCTTACAAGATGTTACCTGAAGAGTTGTCTAATAGTCGTAGAAAGAGTTCCAATCCTAGAAAGATTAAGAGGGATAACAGTATTGATACAGAACAATCAAATCATTCAGTTAACGAAGAAGCTGATTCACCCGAGGAAGAAAGTTCTATTTCTTGTTTATTGTGTGGTCGAATATTTGAAAATCGAAAAGAAATGCGGAAACACATTTTGATTGGCCATGGAATAGATCCAGCTGAGGTAGGATACCCCGATCTGGAAATGGATGAAATGCGTGTTTCAAGAGAGCACTTTGTTGATGAAAGTGAAATGGCTGAAAGCATGTTGGAGGCAGAAACAGTTTTTTGCTGTGAAGTTTGTATTAGGGAGTTTAATGACAGAGCTAGTTTGTGGCTTCATATGTTATATTCTCATCGAGAAGAAGCTGCCACTGCTTGTGGAATTTGTCTACGAGTCTGCTCAGATAATGTTAGTTTGTTGGAACATGTTGATTCTTGCCATCCACGAGAAACATTGGCTACAGATAAACGGAGGTACAGCTGTCAAATATGTGCAAGACAACATGattcaagaaaaaaattgttgGTCCATGTGAAAATTCATAATCTTAAAGATGCTGATGGTCGTGCATTAGATCCAGAGTCAATGGTTGTTTTAAACAGTGACTTTTACGGCCCTGAAGCTCCACCGTCCAACGAGTGTGTATTAGATGATGAATTCAGTATGAGTTGTGAAATGTGTTATAAAACCTTTCCAACAGAACTTAAACTAATAAAACACAAAAGGAATGCTCATAAAGACTCAGAAGCAATGCATAGCACTAATAGTTCTGccacatacaaattatttttcccTTGTGAAATGTGTGGACTCTCGCACTCAACTAGGACAGAGCGTTGGAGACACGTCTTCAGCTGTCATGCAGATGAGCCTTCATTGGTTTGCCAAAGAGAGGGTTGCTGGAAAGTATTTCCAACTAGAGCTCTTCAATACGAACATGTGAGTAGTCATCATGACCTTCAAGGGGACTCCCCCAACACTTGTGAAATTTGTGGCAAGCTATGGGCTACTAGAATGAACTATTGGAAACACATGATGGGTGTTCACAGTGATTGCTTGCCTTTCATCTGTGGTGTTTGCTTAAAAGTTTTTTGTAATGTATCCGATCTAGCAAATCATGTCAAAGATAAACACTATCCCCTTGACAATTCTGAGGAGTTCTGCTGTGACATTTGTGGTAGGCCatattcaaaaaaatcaaaaatgtccAGGCACAGGAAAATTCATAATCTTCCATGTTCCGAAGGTGGATTTGAAGATGGTGTTTTTGATATGCATTCAGATAATACAGATGGGTTTAATGATCCAGGAGCCTTAAAATGTAAAGAATGTCCGACAGAACAGTTCTTAGATTTAGAAGAACTCTCAGAACATCGACGATCAGCTCACAATTTAGTTCCATGTGATTTATGTCCAAAATACTATGGACGAACTTCACATCTTTGgaaacatgtttataaaattCACAAAACCCACCCTGACATTACTTGTAATATTTGTCAGAAAACATCAGCATCAAAATTTCATTTATCAAAACACTATGCGAAACATCATCGTTCTGCACCAGAAGAAAACAACTATGTTACATTAAATGATGTTAGTAATTCAGGAGATATTCATAACTGTAGTAAGTGTAATAAAGTTTTCCGAAAAGATCACTTAATGAGGCAACATCTGAAACATTGTACAGGACCTAAGCCCATTAACACTCTTATTGGATCAACCCCAGCTGTAAATGGATCATTTCCGTGtgaaaaatgcaaaaaagtaTTTGACACTCCAAGTATTCTTCGCAAACATGTAAAATCTTCTCATATAATTTATACTTGTGAAATATGTGAGGTTTCGAAAGACTCCAGAACTGAATTGTTTAATCACATCAAAGCTGAACATCTAAACCATCCAGATTTAACATGTGACGTAACGTCATGTTTGAAAATGTTGCGTGTTAAAAAAGATCTTATAAAACATAAACGTGAACATCGTCAAGGTTACCCCCCACCAACTTGTGAGTTTTGTGGTGAGCTTCTTGCGAATAGATTAAAACTACGAAAACATTTACGATCAAATCATACAGAACAGTCAAAATATCTATGTTCTATTTGTACTGTTTCTCATCTAAGGTTTGAAGACTTACAAGAGCATATCAAAGAAAACCATCCTTCGTCTATTGGTAAACCCAATACATGTACAATTTGTGCAAGAAAATTCCCCACTAAGTACAAACTTGAAGTTCATCTTAAAGTACATGGTAATGAATTCTTTCATTGTTTAACTTGTTTTGAAGTATTTAGAAAAGAAGAAGATTTTAATGCTCACAGTGAAATTCACCCTCCAAAAAAAGTAAGCGTGCCAAAAATTCAAGAAGAGGGTAAAGATTCTAATGCCGAAAGTGATGACGAGGAAGGAGGCAAGAAACGTTCACTTTCACCTGGTACACAGAGTAgctcaaaattaattaaattggcACATAATTGTGTATGCTGTAAGGAAACATTTACCACAAAGAGTGAACTTTCCAAGCACCAATTAGAAACTCACAGTAGCTTAAAATGTAGCATTTGCCTTACTTATTTTGAATCGGAAGATGTATTGGCGAATCATAAAATTACATGTAAACCAAGTGAAGGAAGAGTTAAGCGAAGGTCAGCGTTAAACTCTTTAATTTTCAACAAGAGTATCGAACGGGTATTAAATGCAGAATCTGATGATGAGTTAAGTGCAACAAATCGATCTTCTGTTAACAGTGTTGATGACAATTCTAGTAGTTCAAAAGATCTCTGGACCTCAGGTAAGTATACTAGTGGGAGAAAAGTTTATGAAAATGATAATTCGTTTTCACCGTGTGAACATTGTGAAAAAACTTGGCCAATGAAAAGAGCCTTATGGCAGCATTTGATTCGTTCACACAGACCAGAAGCAGCAACCACTTGTGGTGTTTGTTTAAAGTCTTGTGGATCTTATTACAATTTAGACATGCATTTGGTTGAAGAACATCCCACAAACTTTGAAATGGATGATAGCAATTCAACCTGTAGAGTTTGTGGGCGTTACCATAATGCTCGACACAAACTGCAAGGCCATTCTGCGATTCATGCAGGTGATGAAGAACGATCAGCTATCCTTCAGTATGATTGTTCTATCTGTGATAAGTCATATACCTCAAGAGGGTTTTTAATCAAACACGAGAAAGAAGAACACAACATCAATGTTGAAAGAAAGTATggtgatttgaaaaaaaatgaacaatcagataatgaattatttgttaaCAGTATTAGCTCAGATGACGATGATTCTCAGTTTGAAGGTTTTCCTGTGGAAAGCTGTGAAACTGTTACACCTTTTGCAAAATCTTTATTAAAAGATGTTGAGAAAGAAACAAGTTCTCCAATTGAAGAATTTGCTATTCATTCTCCCGATCCTGAATTAAAACCTATGGAATTAGATTCTGATAGTGACTCTAGTAGACACAGCATATCGCCTGATATGAAGTTAGACCCAGATAATTCTAATGATGCTTTTAAGGATATGTCTGTATTGGATACATCTAACAAAAGTGAAAGTAGAGACAGTTTCAAAGTGGAAGaattgtttgaacaaaataatactCAGGAGAGTGCAAGTGATGTAGACAAAGAAGATAATTCAAGTTTTGATTGTCAACCAGATATAAATAAAGAAGATAGTGAACTAATGTATGATATAGAAGACAGTGTGGTTCAAAGTAATGTGATAAACACAGTGAAATCATTTCAATCAGTTGCTAGCTTGAATCAGTGTTCGAGGCAAAGTGCATCGTTGGATGAGAATAGTTTGCAACTTGTTTGTAGCAATGATTCCAGTCGATACATTTCTCAAAACATCACAGACTCAGAAATGGATAACCTTGTTACGTAA
- Protein Sequence
- MTLHWLMFLTKVQCWEPEGLDKKLGGVDQLHDNVFILEAVVWSAWKGRKSGCPSGSQSRRLGPACRRHLGGGTLAMANKKDAVRLFNCPVCEKSFVSKGNLSNHIKVHSSEGYPQVTDRPFQCELCSKSYTVAKHLWGHVSSAHRGDPRVTCQYCLRIFSTSQNLDDHCKTKHSTEYVEAKVETSNGDSVKLEMMREDCAGESPYKMLPEELSNSRRKSSNPRKIKRDNSIDTEQSNHSVNEEADSPEEESSISCLLCGRIFENRKEMRKHILIGHGIDPAEVGYPDLEMDEMRVSREHFVDESEMAESMLEAETVFCCEVCIREFNDRASLWLHMLYSHREEAATACGICLRVCSDNVSLLEHVDSCHPRETLATDKRRYSCQICARQHDSRKKLLVHVKIHNLKDADGRALDPESMVVLNSDFYGPEAPPSNECVLDDEFSMSCEMCYKTFPTELKLIKHKRNAHKDSEAMHSTNSSATYKLFFPCEMCGLSHSTRTERWRHVFSCHADEPSLVCQREGCWKVFPTRALQYEHVSSHHDLQGDSPNTCEICGKLWATRMNYWKHMMGVHSDCLPFICGVCLKVFCNVSDLANHVKDKHYPLDNSEEFCCDICGRPYSKKSKMSRHRKIHNLPCSEGGFEDGVFDMHSDNTDGFNDPGALKCKECPTEQFLDLEELSEHRRSAHNLVPCDLCPKYYGRTSHLWKHVYKIHKTHPDITCNICQKTSASKFHLSKHYAKHHRSAPEENNYVTLNDVSNSGDIHNCSKCNKVFRKDHLMRQHLKHCTGPKPINTLIGSTPAVNGSFPCEKCKKVFDTPSILRKHVKSSHIIYTCEICEVSKDSRTELFNHIKAEHLNHPDLTCDVTSCLKMLRVKKDLIKHKREHRQGYPPPTCEFCGELLANRLKLRKHLRSNHTEQSKYLCSICTVSHLRFEDLQEHIKENHPSSIGKPNTCTICARKFPTKYKLEVHLKVHGNEFFHCLTCFEVFRKEEDFNAHSEIHPPKKVSVPKIQEEGKDSNAESDDEEGGKKRSLSPGTQSSSKLIKLAHNCVCCKETFTTKSELSKHQLETHSSLKCSICLTYFESEDVLANHKITCKPSEGRVKRRSALNSLIFNKSIERVLNAESDDELSATNRSSVNSVDDNSSSSKDLWTSGKYTSGRKVYENDNSFSPCEHCEKTWPMKRALWQHLIRSHRPEAATTCGVCLKSCGSYYNLDMHLVEEHPTNFEMDDSNSTCRVCGRYHNARHKLQGHSAIHAGDEERSAILQYDCSICDKSYTSRGFLIKHEKEEHNINVERKYGDLKKNEQSDNELFVNSISSDDDDSQFEGFPVESCETVTPFAKSLLKDVEKETSSPIEEFAIHSPDPELKPMELDSDSDSSRHSISPDMKLDPDNSNDAFKDMSVLDTSNKSESRDSFKVEELFEQNNTQESASDVDKEDNSSFDCQPDINKEDSELMYDIEDSVVQSNVINTVKSFQSVASLNQCSRQSASLDENSLQLVCSNDSSRYISQNITDSEMDNLVT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -