Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010008969.1:6529-15647[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 7.7e-06 0.0031 20.8 2.7 1 23 122 144 122 144 0.99

2 15 0.00016 0.064 16.7 1.4 1 23 150 172 150 172 0.98

3 15 0.0012 0.49 13.9 4.1 1 23 178 200 178 200 0.99

4 15 1e-05 0.0042 20.4 1.3 1 23 206 228 206 228 0.99

5 15 0.00027 0.11 15.9 2.1 1 23 233 255 233 255 0.98

6 15 0.011 4.3 10.9 0.3 1 23 261 283 261 283 0.95

7 15 0.00019 0.077 16.4 3.1 1 23 289 311 289 311 0.98

8 15 0.024 9.6 9.8 2.0 1 23 317 339 317 339 0.98

9 15 0.058 23 8.6 2.3 1 23 345 367 345 367 0.98

10 15 0.007 2.8 11.5 1.0 1 23 401 424 401 424 0.98

11 15 1.6e-05 0.0063 19.8 4.7 1 23 439 461 439 461 0.99

12 15 0.39 1.5e+02 6.0 0.2 1 23 467 490 467 490 0.97

13 15 0.17 67 7.1 1.6 1 23 506 528 506 528 0.96

14 15 0.00032 0.13 15.7 1.8 1 23 534 556 534 556 0.99

15 15 0.00018 0.071 16.5 5.9 1 23 562 584 562 584 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	7.7e-06	0.0031	20.8	2.7	1	23	122	144	122	144	0.99
2	15	0.00016	0.064	16.7	1.4	1	23	150	172	150	172	0.98
3	15	0.0012	0.49	13.9	4.1	1	23	178	200	178	200	0.99
4	15	1e-05	0.0042	20.4	1.3	1	23	206	228	206	228	0.99
5	15	0.00027	0.11	15.9	2.1	1	23	233	255	233	255	0.98
6	15	0.011	4.3	10.9	0.3	1	23	261	283	261	283	0.95
7	15	0.00019	0.077	16.4	3.1	1	23	289	311	289	311	0.98
8	15	0.024	9.6	9.8	2.0	1	23	317	339	317	339	0.98
9	15	0.058	23	8.6	2.3	1	23	345	367	345	367	0.98
10	15	0.007	2.8	11.5	1.0	1	23	401	424	401	424	0.98
11	15	1.6e-05	0.0063	19.8	4.7	1	23	439	461	439	461	0.99
12	15	0.39	1.5e+02	6.0	0.2	1	23	467	490	467	490	0.97
13	15	0.17	67	7.1	1.6	1	23	506	528	506	528	0.96
14	15	0.00032	0.13	15.7	1.8	1	23	534	556	534	556	0.99
15	15	0.00018	0.071	16.5	5.9	1	23	562	584	562	584	0.99

Sequence Information

Coding Sequence: atggaACTGATATTTTTTCAGGAAGCTCTTATCGACATTACAACTATTAAGTCTGAAGTAACAGCTGAACCTTTAGAAGTGTTGAGTTGTAACAAATTGGAAAAAGACCTTGACAATGAACCTGAACAGgttaCTGCAGAGGTTTGTAATGTGGTTGTCAAGCTGGAAGAACTGGATGAACCTCTACAGTTGCCAAGCAATAACACAACTGATGATCATGGAAATGATGGATCTGAACAAGAGAACGGCCTATTCCAAATCCAGGACTCTTGGTTGGAGGAAGCTGATACCTCCTCTCCAAGTATTGACGATATGTCTCAGTATATTAGTTTAGACAGTCAGGACAGTATGATAGATAAACCTTTTAAATGCAATCAATGCCCTTACAGTACTAAACGCAAGTTTTCTTTGACATTGCACATGAGGATTCACACTGGTGAGAAGCCGTACAGTTGTTCTCTGTGTCCGTACAAATCTGCCAAAAAGTATAACCTAAATCAACACATGTCATCCCACACAGGCATAAAACCATATAAGTGTAGTCAGTGTCCCTATGAAACCACAAAGAGATGCAATTTGAATTCCCATACAAGGATTCACACAGGACATATGCCCTATAAATGTAGGATATGTCCGTATCAAACTACGACAAATAGTAACCTCAAGATACATTTGTCAACTCACGAAGATAAACAGTTTCAATGCACCGAATGCTCTTATAAAGGCCGTAACAAAAACTTGTTGAAAAAACATATGGATAGTCACTCCGGACTAAAACCATTTGAATGTATTGTATGTCCTTTTAAATCAGCAACCAACGTGAGCCTGAAACTGCACATGAGGAGACACACAGGTGAAAAACCTTTTACGTGTTGTTTCTGTCCTTTCAAAGCTGCCAGAAGATCTAATCTGACTGTTCACATGCGAACTCATACTGGGGAGAAACCTTATAAGTGTAGCTTGTGTCCTTACGAAGCTGCTCAGAAGTTCTGTCTGGACACACACATGAAAAATCACACCGGCGAGAAAGCTTTTCAGTGTGATCAGTGCGCATTTAAGGCTCATAGGAAAAGTGATATGGAGAGACACATGTTCATCCACTCCGAGGATAAACCATACAAGTGTAGTTTGTGTTGTTACCAAACTGCTCACAAGAGAGGGTTTTTGATACACATGTCAAATCATACTGGTGAGAAACCGTATGAGTGTAATCAGTGTAGCTATAAAACTGCTATTAAAAACGATTTAAAAGTACACAAGCGTAAAGCTCACAGCAGTGATGATGAGGAAAGCAAAAGTCAAAAGGAAAAGCGCTTCAAGTGTAATTTATGTAATCACAGAGTTACAAAGCAGTACAATTTGAaaatacacatgagaactcataCTGGTGAGAAACCTTTTAAGTGTAACTTGTGTCTGTATAAAACCGCCTTCGAGGGTAATGTAGCAGTTCACGTAAAAAGAATCCACCAAAAAGAGAAATTCGTAATGCCATATCGTAAGGTGAAAAAGATATTTAGGTGTATGTTATGTATGTTCAAAGCATCGTATAAAACCATGTTGAATGTCCACATGAGGAGTCACACTGGCGAGAAGCCGTACAAGTGTAATCAATGTTCGTACAGTACCGCCCAGAACTACTATCTGGTTGTACACAAGAGGTCCCACTCTGGAGACCGACCCTACAAGTGCAAGCTGTGCACCTTCAAGTCCACGCAGAAGTCTCATCTGAACATTCATATGAGGTATCATAGTGACGCAAGTATGATTGACAAAACTACTGAAGGAGAGAAAATACCATCAGCTTCTTTACAAAATGAACCAACACAGATTCACAGCAATGTAAAGTGA
Protein Sequence: MELIFFQEALIDITTIKSEVTAEPLEVLSCNKLEKDLDNEPEQVTAEVCNVVVKLEELDEPLQLPSNNTTDDHGNDGSEQENGLFQIQDSWLEEADTSSPSIDDMSQYISLDSQDSMIDKPFKCNQCPYSTKRKFSLTLHMRIHTGEKPYSCSLCPYKSAKKYNLNQHMSSHTGIKPYKCSQCPYETTKRCNLNSHTRIHTGHMPYKCRICPYQTTTNSNLKIHLSTHEDKQFQCTECSYKGRNKNLLKKHMDSHSGLKPFECIVCPFKSATNVSLKLHMRRHTGEKPFTCCFCPFKAARRSNLTVHMRTHTGEKPYKCSLCPYEAAQKFCLDTHMKNHTGEKAFQCDQCAFKAHRKSDMERHMFIHSEDKPYKCSLCCYQTAHKRGFLIHMSNHTGEKPYECNQCSYKTAIKNDLKVHKRKAHSSDDEESKSQKEKRFKCNLCNHRVTKQYNLKIHMRTHTGEKPFKCNLCLYKTAFEGNVAVHVKRIHQKEKFVMPYRKVKKIFRCMLCMFKASYKTMLNVHMRSHTGEKPYKCNQCSYSTAQNYYLVVHKRSHSGDRPYKCKLCTFKSTQKSHLNIHMRYHSDASMIDKTTEGEKIPSASLQNEPTQIHSNVK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -