Sbis063449.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- salm
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000374.1:810874-830887[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 6.5e-06 0.0026 21.0 0.9 1 23 415 437 415 437 0.98 2 9 1.3e-05 0.0051 20.1 2.1 1 23 443 465 443 465 0.98 3 9 0.081 32 8.2 3.8 2 23 763 784 762 784 0.98 4 9 7.8e-08 3.1e-05 27.1 0.6 1 23 790 812 790 812 0.97 5 9 0.00088 0.35 14.3 2.7 1 23 822 844 822 844 0.98 6 9 0.0033 1.3 12.5 2.1 2 23 1052 1073 1051 1073 0.97 7 9 3.2e-07 0.00013 25.2 1.4 1 23 1079 1101 1079 1101 0.99 8 9 1.8e-06 0.00071 22.8 4.0 3 23 1194 1214 1192 1214 0.96 9 9 2.1e-07 8.4e-05 25.7 0.9 1 23 1220 1242 1220 1242 0.98
Sequence Information
- Coding Sequence
- ATGAGTTACCGAAGCCATCTAAATGTTGAGAAGTCCCGCGTGCTCACGCGTTTGGCCATCTCCCAGGCGCTGTCAACGAAACGCTCTCTCTCTCTATCCTTTGGCATTGTCGTTGTGATAGCAGATGTACAAGTGGATGTTCATTTTGCTATTGCTCAGCTTGTATACGAGCCTTCCACATCCCTTTGTCTTCCGCCGGCAGATAATCCTCGCTCAGCCTTTCTTGTGTTGTGGATTTCATCACGTTTGGACCATCCTCGCTGGCATTTCAGCACAAACACCAGCGAGGGCTCTGTGACGGATTCCGAGGAGGAAGGAAGTAGCAATGGGCCACGAGAGGATACGATCTGCGAGCACTGTAACGCTGAGTTACCTTCGGTGCCAGAAGCTGAAGAACATCGGCGGGAATGTGGGGCGAGGAGCAAAGACAGTGAGGAGGACGAAGATGAAGAAGAAGAGGGTAGTAGTTTGCCAGAAGAGGGAAAGCGGCAAGAAGTAGCACGCCGCCAAAAGCAAGATGCCGAAAACAATAACAGCGTGGAAGATGGCGTAGAGGATGGTGAAGATGAGCCTCCGGTAGGTTTCCCCCTAGGGCATGTAACTCTGGAGGCACTGCAGAATACCAAGGTGGCCGTGGCCCAGTTTGCGGCGACGGCTATGGCAAACAACTCAGACAATGCTGCGGCACTTCAAGAACTAGCCGTGCTGCAGTCCACCCTCTACACACTTCAGCATCAACAGATGATGCAACTCAATCTGATCCAGCAGCTTCAGCAGCAGTTGCAGATCACGCGGCCCCCCTCTCCTTCTGTTACACCTCTACCACCTAGTACTCCTACTCCCACCCCCCTGCCAGCATTACCATCTCCACCCACCCCTGTCTCACAACCACTGCCCGCCTCTGACTTGCCGACTCCGACCTCAACTGCTACAGCTACTTCTGCCCCAAAGTCTGTAACACCCCCTGTTGTCCCCACACCTGCGCCAAGTTTGCCGCCGTGTTCCATCTCGTCGGCTTTCGCTTCTTCCATCATAACCAACTTGGATCCCCCACCCTCCCCAAGCGAGCCCAATACACTCGAAATGCTTCAGAGGCGAGCCCAAGAAGTCTTAGACAATGCCAGCCAAGGGCTGCTCGCTAATAATCTCGCTGACGAGCTTGCGTTCCGAAAAAGTGGCGGCAAAAACTCTTTGTCCCCCTATGATTCCAAGACCGGTGGCAGAAATGAGCCGTTCTTCAAGCACCGCTGCCGTTACTGTGGGAAGGTGTTCGGCAGTGACTCGGCTCTTCAGATCCATATCAGATCACACACAGGTGAGCGCCCCTTTAAGTGCAATGTTTGTGGTAGCAGGTTCACGACCAAGGGCAATCTCAAAGTGCATTTTCAAAGGCACACTTCCAAATTTCCGCACATCAAGATGAATCCTAATCCTATTCCTGAGCATTTAGACAAATACCATCCTCCTCTTCTAGCTCAGATAGGAGCCCACCAGAGTCTGCCTCCAGGGCACATACCCCATCCCCCGCCACCACAACACCATCAGTTTCCTGGCAGCCCACCCTTCCCGCCTAACGCACTGCCACTGTTCCGCCCCCAGCACGAAATGGTCATCTCACCACCACACCAAGCCCTTGTCAAGCCTGTCCTGTCCCTCCCACTTTTCGGGCCGCGGCCGGACTCACAGCAAGATATTCCAGAGAATCTTAGCAAGCCAGTACTATCAACACATTCCTCCTCACCACCACCCTCGGACCATAGTGACCACTTCAAGAAGGAGCTTTCTGAAGAGGAAGGCCCTCTGCCTCTAACTGTCGGCTCCTCAGAGCCTGCAGAGCCTATGAAGATGGAAGAGAGATTGTCACCCAAGACGGAACCTGAGAGGTATTCTCCCATAGCCTACGAAGAATGCAGCTCCGACTCCAAGTATAGTCAAGATCCTGAGGACGTCCCCGAGAGTTCACCCAGACCCGACGACTGCCTACAAGATCAACCAGAAAACCTCTCCAACAAAAGTACGTCTGATATAGGACATTTTAGATTTTGTGATCAAAGGCTGCCTCCTTTTCCGTTTCCTAGCTTAGTTCATTCCCCACCCAGCAGCACCTCTACTCCCATCCAAGAGTTCGACCCGTCCAAAGATCCCGCCCTCTACACCAGTCTCCTTCCCAGACCTGGCAGCTCCGACAATTCTTGGGAAAGTCTTATAGAAATAACTAAAACCTCTGAGACGTCCAAGCTCCAGCAGCTGGTCGATAATATAGAGCACAAATTAACAGATCCTAATCAATGTGTCATTTGTCACCGCGTTCTGTCATGTAAGAGTGCTTTGCAGATGCATTACAGGACTCACACAGGTGAGAGACCATTTAGGTGCAAGATCTGCGGCAGAGCGTTTACGACCAAAGGCAACCTTAAGACTCACATGGGCGTGCACAGGATAAAGCCCCCCATGAGAGTGCTGCACCAGTGTCCGGTGTGTCACAAGAAGTTCACCAATGGGCTCGTCCTACAACAGCACATCCGCCTGCACACGGGCGAGCCCACAGATCTGACTCCCGAGCAGATACAGGCTGCCGAGATCAGAGATTACCCTCCTGTTTCCTATCCACACTCACTACCCCCACCACCCCTTCCTGACGACAGGCGAGTCTTAGGCCCCCCAGTCAAAGACGATCGTGTCGATTCAGACAAATATTCCTTTCTAGAAGAAAACCAGTTCAGTAGAGATAGTCCTTCACCCCAATTAGGTTTGCCCTCATTCTCCACCTCACTAGCAGCCCTGGAAAATCAAGTCCGTACCATAACCACTATAGCATCCCAGTCCATACCAAAACATGTTACCCAAAGTGAGGAATTGTGCAATAATAGAGCGTTCACGCCTCTTACAGTGAACGGTGAAAAGTCTCCACCGGGGAGTCCGAGCGGGTCCGAGCGGCAACTGACTCCATCCCCCCACTTCCACCCTGTCCACCTCCCTCGCCCAATGTCGACGCAGAGTCCGGCGACCTCGGAGTCCTGCGCCTTGGACCTCACGCCGACACCGAGGGCCTCCAGCGTCTTCTCGGGGTTCGGCTTGCTGCCGCTCACCTCCTCGGTCCTAACATCGACGGCGTTCAGCCCGTTGGTGGGCCCCGCAGTAAGGGGTAACACCACATGCAACATCTGCTTCAAGACGTTCGCCTGCAACTCAGCCTTGGAGATCCACTACCGGAGCCACACCAAAGAGCGACCCTTCAAGTGTACGATCTGCGACCGAGGGTTCTCCACTAAGGGGAACATGAAGCAACACATGCTGACGCACAAGATCCGAGACATGCCTTCACACCTGTTCGAGCAAAAGTCGCCGCAGGATGAGACGAGCAACACTAGCTCAGAGAGTCGAGACTTGAGCATGCCTCGAGCCCTGAGTGTGGAACCCCCTCATCCCATGACCCCGCAGCCGCCACCACCACCTCCACAGGTGCCCAAAGAGATCCACCACCAGCCACCACCTCCTCCTCAGCCAGTCAAGAGGTCTCCCCCAGAGGAGGCTATATTGCCCATTCCCAAGAGGCAACCTAGCTTGCCAAAACACTTGTGCCATGTTTGCAATAAGAACTTCTCGTCGTCATCGGCGTTGCAGATTCACATGCGCACTCACACGGGAGATAAGCCCTTCCAGTGCACTATTTGCCGCAAGGCTTTTACCACCAAGGGGAACCTTAAGGTTCACATGGGCACTCATATGTGGACCAACGGAGCTTCGAGGCGTGGCCGACGCATGTCCCTCGAACTACCACCGCTCGGAATCACACCAAAGGATTCGGATTTCCTACACAGGAGACCAGACATTTTCTACCCCTACCTTCCAGCCCCGTTCCTTAATGGGATGCAACAGAAGCTGAATGAAATCTCCGTGATACAGAATGTGGGAAGCAACATGAGCAATGGTATGCTGGGCTTCGGAGGCTATGGAGGCACTCTTCCAAATGAAATGAAGCCGGGTTCACCAATGTCAGAGAAGCAGCCAATGGCATCCCCCCACCATAGAGCAACACCCCCTCTATGGGACTTGCACTACGAGCGGAAACCCCCAGTGCCCGAGGATCGAATGGACTGTCAGTCCCCACCTGGACACGTGCCACCTCGCAGTGAAGGGTTGGCTGCATGA
- Protein Sequence
- MSYRSHLNVEKSRVLTRLAISQALSTKRSLSLSFGIVVVIADVQVDVHFAIAQLVYEPSTSLCLPPADNPRSAFLVLWISSRLDHPRWHFSTNTSEGSVTDSEEEGSSNGPREDTICEHCNAELPSVPEAEEHRRECGARSKDSEEDEDEEEEGSSLPEEGKRQEVARRQKQDAENNNSVEDGVEDGEDEPPVGFPLGHVTLEALQNTKVAVAQFAATAMANNSDNAAALQELAVLQSTLYTLQHQQMMQLNLIQQLQQQLQITRPPSPSVTPLPPSTPTPTPLPALPSPPTPVSQPLPASDLPTPTSTATATSAPKSVTPPVVPTPAPSLPPCSISSAFASSIITNLDPPPSPSEPNTLEMLQRRAQEVLDNASQGLLANNLADELAFRKSGGKNSLSPYDSKTGGRNEPFFKHRCRYCGKVFGSDSALQIHIRSHTGERPFKCNVCGSRFTTKGNLKVHFQRHTSKFPHIKMNPNPIPEHLDKYHPPLLAQIGAHQSLPPGHIPHPPPPQHHQFPGSPPFPPNALPLFRPQHEMVISPPHQALVKPVLSLPLFGPRPDSQQDIPENLSKPVLSTHSSSPPPSDHSDHFKKELSEEEGPLPLTVGSSEPAEPMKMEERLSPKTEPERYSPIAYEECSSDSKYSQDPEDVPESSPRPDDCLQDQPENLSNKSTSDIGHFRFCDQRLPPFPFPSLVHSPPSSTSTPIQEFDPSKDPALYTSLLPRPGSSDNSWESLIEITKTSETSKLQQLVDNIEHKLTDPNQCVICHRVLSCKSALQMHYRTHTGERPFRCKICGRAFTTKGNLKTHMGVHRIKPPMRVLHQCPVCHKKFTNGLVLQQHIRLHTGEPTDLTPEQIQAAEIRDYPPVSYPHSLPPPPLPDDRRVLGPPVKDDRVDSDKYSFLEENQFSRDSPSPQLGLPSFSTSLAALENQVRTITTIASQSIPKHVTQSEELCNNRAFTPLTVNGEKSPPGSPSGSERQLTPSPHFHPVHLPRPMSTQSPATSESCALDLTPTPRASSVFSGFGLLPLTSSVLTSTAFSPLVGPAVRGNTTCNICFKTFACNSALEIHYRSHTKERPFKCTICDRGFSTKGNMKQHMLTHKIRDMPSHLFEQKSPQDETSNTSSESRDLSMPRALSVEPPHPMTPQPPPPPPQVPKEIHHQPPPPPQPVKRSPPEEAILPIPKRQPSLPKHLCHVCNKNFSSSSALQIHMRTHTGDKPFQCTICRKAFTTKGNLKVHMGTHMWTNGASRRGRRMSLELPPLGITPKDSDFLHRRPDIFYPYLPAPFLNGMQQKLNEISVIQNVGSNMSNGMLGFGGYGGTLPNEMKPGSPMSEKQPMASPHHRATPPLWDLHYERKPPVPEDRMDCQSPPGHVPPRSEGLAA
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -