Sbis097414.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010001406.1:23724-42389[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.028 11 9.6 1.4 1 21 248 268 248 269 0.93 2 12 0.001 0.4 14.2 4.3 1 23 291 313 291 313 0.98 3 12 1.4e-06 0.00058 23.1 1.6 1 23 319 341 319 341 0.97 4 12 3e-06 0.0012 22.1 1.1 1 23 351 373 351 373 0.98 5 12 8.7e-06 0.0034 20.6 3.1 1 23 379 401 379 401 0.96 6 12 4.2e-05 0.017 18.5 0.2 1 23 407 429 407 429 0.98 7 12 0.0014 0.54 13.7 0.5 1 23 435 457 435 457 0.97 8 12 3.8e-05 0.015 18.6 1.4 2 23 464 485 463 485 0.97 9 12 0.00017 0.068 16.6 0.4 1 23 491 513 491 513 0.97 10 12 0.00015 0.062 16.7 0.1 1 23 519 541 519 541 0.95 11 12 0.0059 2.3 11.7 3.8 1 23 546 568 546 568 0.98 12 12 0.0035 1.4 12.5 3.6 2 23 581 603 581 603 0.95
Sequence Information
- Coding Sequence
- ATGGCTAAAGACAAATGGAAAATATCAAGTTGCAGAAAAAGTAATCTTGAAGTAATCACTCTTCAAGATGTGATCGATAAACTTAATGCAACTTTGCCAGATTTTAAATTCCACTGTTATGTTAAAAAGGTTCAGTCTGAATGTTGtgatcaaataaaaaagaaaattgagaaGGTGTCAGCAGTAGTTCAAAATAACTATGCTGAAAACTTCTCATTAACACCACAAGATGAGATTCAAAGCGCTCATTGGAGCCATGCTCAATTGACACTTTTTACTGCTTGCATCTGGTACGAAAACAGTATCAAGTCTTACGTTGTTatTCAAGAGACAAATGAAAAGGAGAATGAGGAAGACAGAGAAAGGTTGAAAGCTCAAGACTCAGAAGTTTTTGAAGGTTTACCTGTTAAAGTAGAGCTTACTGACAGTAGTGATGAGTTCAGTCACGAGATGGTACCGGAAGATGAAAGAGAGTCAATTAATTGTGATGTAAAGGCTGAACCCTTGGAAGAAAACTATGTTGATCGCATCAACACGTTGTTAGAAGCTGTCACTGCAAGTGAATTTGAAATCTTGGGAGCAAAGATAACTGATGAAGATGGAAACGTCGAGGGCGATGATTCAACTAATCATGGACATTTTCTTACTGTGGGATCTCTTCAGGGATTTCTTTGGGAAAAGAAAAAGAGTTGGCTGGGGCCAGGTCAGCAAGCCAGGCCAAAACGAAGACATAGAGGTGGATTTAAGTGTGCGAAGTGCTCTGCTTCGTTCAAGTACCAGTCAACTTATGACTATCATGTCAAATCGCAGTGTGGCACAAAAATGATTGCCGAGAGCAATAAGCTTGTATACAAGGGCAAGAATCAGGCATTTACATGCAATGTGTGTCACAAGGAAATGTGCAGCCGAACCAGCCTCATGGTGCACATGCGAATTCACAACGGAGAACGTCCATTTATTTGTGATGTTTgcaatcgatcgttcacacagaAAGCCCATCTGAAAGACCATGTGAAAATTCATATCAACAAGCCTGCTAAATCTCTGCTCCATACATGTGTGGAATGCGGAGAAGTATTCAGCACAAAGAAGTTCCTTCAAGAACATATGCAAGTGCATTTTGGTGATAAAATTTATGATTGTGATGTGTGCCATAAACGTTTTCGCACTCGTTCTAACTTAAGTACTCATAAAATAATCCACTCAAATAAAAAAGAGTTCAGCTGCTCTATTTGTGGTAGAGAATTTTTAAGAAAACCTAATTTGGACGAGCATATGCGAATCCATACCAAAGAAAAACCATTTATCTGTGACATATGTGGGAAGGCATTTGCAGAGAAGAATCGGAGGAATACCCATGTCAAAAGACACACAGGAGAGTTGAGGCAAGTGTGTCCTGTTTGTGGGAAAAAGTTTGCGTGTTCGTATGACTTGCGAATCCACCAACGGAagcacactggagagaaaccattttcTTGTAATATTTGCGGAAGAATGTTCAATCGGAAGGCTATAATGGAGACCCATATGACTATCCACACAGGCCGAAAGGACTTTGTGTGTCTTCAGTGTGGTGAGGCGTTCAACAGAAAGTCAAAACTTGATGTGCACCTTGCAGATCACACTGGTGAAAAATTTTACTGTGAGATCTGCCATAAAGTGTTCAAATGTAAAGCTTATTTGGTACCACACATCCGGACACACTTTGGTGGAGGCCGTAAGAAATCCACCAAGCAACCAAAATGCCTTCTGTGCCATAAAATTTTCAAATCCAGTCAATCGTTCGAACAACACTTGAAAGAAACACATCCGACAATGTTCGAACCTAATTTCATCAAAGTTGAACAGCTTGAAGGTGAAGTTGAGTGa
- Protein Sequence
- MAKDKWKISSCRKSNLEVITLQDVIDKLNATLPDFKFHCYVKKVQSECCDQIKKKIEKVSAVVQNNYAENFSLTPQDEIQSAHWSHAQLTLFTACIWYENSIKSYVVIQETNEKENEEDRERLKAQDSEVFEGLPVKVELTDSSDEFSHEMVPEDERESINCDVKAEPLEENYVDRINTLLEAVTASEFEILGAKITDEDGNVEGDDSTNHGHFLTVGSLQGFLWEKKKSWLGPGQQARPKRRHRGGFKCAKCSASFKYQSTYDYHVKSQCGTKMIAESNKLVYKGKNQAFTCNVCHKEMCSRTSLMVHMRIHNGERPFICDVCNRSFTQKAHLKDHVKIHINKPAKSLLHTCVECGEVFSTKKFLQEHMQVHFGDKIYDCDVCHKRFRTRSNLSTHKIIHSNKKEFSCSICGREFLRKPNLDEHMRIHTKEKPFICDICGKAFAEKNRRNTHVKRHTGELRQVCPVCGKKFACSYDLRIHQRKHTGEKPFSCNICGRMFNRKAIMETHMTIHTGRKDFVCLQCGEAFNRKSKLDVHLADHTGEKFYCEICHKVFKCKAYLVPHIRTHFGGGRKKSTKQPKCLLCHKIFKSSQSFEQHLKETHPTMFEPNFIKVEQLEGEVE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -