Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010000774.1:175976-184273[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 0.076 30 8.2 0.4 3 23 76 95 74 95 0.94

2 14 4e-05 0.016 18.6 1.5 1 23 101 123 101 124 0.96

3 14 0.00063 0.25 14.8 1.1 2 20 130 148 129 150 0.93

4 14 0.018 7.2 10.2 1.1 1 23 155 177 155 177 0.98

5 14 0.3 1.2e+02 6.4 0.9 1 23 186 209 186 209 0.95

6 14 0.00022 0.087 16.2 0.5 1 23 215 237 215 237 0.98

7 14 0.0016 0.64 13.5 0.2 1 23 241 263 241 263 0.97

8 14 0.0029 1.1 12.7 0.4 2 20 270 288 269 290 0.91

9 14 2.7e-06 0.0011 22.3 3.1 2 23 298 319 297 319 0.97

10 14 1.2e-05 0.0048 20.2 0.4 3 23 329 350 328 350 0.97

11 14 0.00072 0.29 14.6 4.7 1 23 356 378 356 378 0.98

12 14 6.1e-05 0.024 18.0 0.2 2 23 385 406 384 406 0.97

13 14 1.2e-06 0.00049 23.3 2.5 1 23 412 434 412 434 0.98

14 14 3.3e-06 0.0013 21.9 1.2 1 23 440 462 440 462 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	0.076	30	8.2	0.4	3	23	76	95	74	95	0.94
2	14	4e-05	0.016	18.6	1.5	1	23	101	123	101	124	0.96
3	14	0.00063	0.25	14.8	1.1	2	20	130	148	129	150	0.93
4	14	0.018	7.2	10.2	1.1	1	23	155	177	155	177	0.98
5	14	0.3	1.2e+02	6.4	0.9	1	23	186	209	186	209	0.95
6	14	0.00022	0.087	16.2	0.5	1	23	215	237	215	237	0.98
7	14	0.0016	0.64	13.5	0.2	1	23	241	263	241	263	0.97
8	14	0.0029	1.1	12.7	0.4	2	20	270	288	269	290	0.91
9	14	2.7e-06	0.0011	22.3	3.1	2	23	298	319	297	319	0.97
10	14	1.2e-05	0.0048	20.2	0.4	3	23	329	350	328	350	0.97
11	14	0.00072	0.29	14.6	4.7	1	23	356	378	356	378	0.98
12	14	6.1e-05	0.024	18.0	0.2	2	23	385	406	384	406	0.97
13	14	1.2e-06	0.00049	23.3	2.5	1	23	412	434	412	434	0.98
14	14	3.3e-06	0.0013	21.9	1.2	1	23	440	462	440	462	0.98

Sequence Information

Coding Sequence: ATGTTTCAGGTATCAGTTTATGTTAGTGAGCCGTCTGAGGATAGTCAAATATCAGAATACCAGGTGAATTTCACAGAAAGCTATGAAGACGCTGGCAACAATTCCCAGGATTGCGGCTATCTAAAGAGGGAGGTGAAGAGCTCTTTTAACGATATTAACGATGACACTGATTTGAAAAACAATGAACTGCAGGTGTTTTGCGATTGTGCTAGTGATACAGTTAACTGCAAGATCTGCAACAGAGCTGTAAAGTATTCTAGTTATGCTTTACATTTACGGCGGCATAAAAACCCTAGGCAGTATACATGTGACAAATGTGGCAAGGTGTTTCAACTTCCCATTCAACTGAGGAACCACTCACTGACCCATCACGCAGGCCAGGATATCTACTGTAACATCTGTAAGCGATCATTTAAACTGCTGAAGTCTTTGCGACATCATCAGGCATCATGTAAAAAGTATTACAAATGCATACATTGTTCGGAAATTTTCCCTCTAAAACGACTTCTTGTAGATCACCTTAAAACACATGAAAAGAAAGTAGTGGAAGAGATTTTTAGCTGTGAGATTTGCTGCATTGTTTTTGACAGTAGTAGGAGTAAGAAGGATCACATAATGGAGGTGCATGTTGCGGCACAACGGTTTGTCTGTGGCTCCTGCGGTGAGGCGTTTGTCACAGAATGTGCGATGAGGCGACATGTTAAAACTCACAACCGCACTTATCCTTGCAAGGTATGTAGCAGTGTCTTTGGAACACGCAAAGAATTGCTTGCTCACAGGCTAGAACACCGCTCACTTAAAGACTTACGCTGTAAAAACTGCGGGAAGGAGTTTGAACATGCAACAGATTACTCAGAACATAAACTGGTTCCGTGCTGTGTGCAGAGTTCTGTTTGTGACCActgtaaaaaatcttttaaagataaaaatgctttaaaaaaacaTGTCCTTACCCATACTCCATTAAGTGAACGTTCCGTGTTGTGTGATATTTGCAAAAGAAGTTTTAGTGGTAACTCTGCTTTAAAAAAGCATGTTCGGTTAATTCACACAGACTTGAGGCCATACACTTGTGAATTTTGTTCCAAGTCATTTAATCAGCTCTGCAAGTTAAAATACCACATTGTAACACACTCAAGTGACAAACCTGTGTCTTGTGAAATCTGTAACAAAGCATTTGGCAATGACAAAGACATCAAAATTCACATGCGGACACATACAGGAGAACGGCCTTTTCAGTGCAACTTGTGCGGTAAAACATTTCGTCAGAGAGGACATGTTAAAACACATCAGATAGTTCATACCAAAGAGAGACCTTTTAGTTGCCAATTATGTGATAAACGTTTTGGTTTGCCTAGTTCTCTTAAAAAACATATGAAGTTGCATGCGTCTAGAATTTTACTATCAGGTAGGTAA
Protein Sequence: MFQVSVYVSEPSEDSQISEYQVNFTESYEDAGNNSQDCGYLKREVKSSFNDINDDTDLKNNELQVFCDCASDTVNCKICNRAVKYSSYALHLRRHKNPRQYTCDKCGKVFQLPIQLRNHSLTHHAGQDIYCNICKRSFKLLKSLRHHQASCKKYYKCIHCSEIFPLKRLLVDHLKTHEKKVVEEIFSCEICCIVFDSSRSKKDHIMEVHVAAQRFVCGSCGEAFVTECAMRRHVKTHNRTYPCKVCSSVFGTRKELLAHRLEHRSLKDLRCKNCGKEFEHATDYSEHKLVPCCVQSSVCDHCKKSFKDKNALKKHVLTHTPLSERSVLCDICKRSFSGNSALKKHVRLIHTDLRPYTCEFCSKSFNQLCKLKYHIVTHSSDKPVSCEICNKAFGNDKDIKIHMRTHTGERPFQCNLCGKTFRQRGHVKTHQIVHTKERPFSCQLCDKRFGLPSSLKKHMKLHASRILLSGR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -