Basic Information

Insect: Stictocephala bisonia
Gene Symbol: PRDM5
Assembly: GCA_035578905.1
Location: JAQJVL010002013.1:109710-113609[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.012 4.7 10.8 5.1 1 23 170 192 170 192 0.98

2 12 9e-06 0.0036 20.6 0.2 1 23 198 220 198 220 0.97

3 12 0.0088 3.5 11.2 1.5 3 23 231 252 230 252 0.97

4 12 3.1e-06 0.0012 22.0 2.4 1 23 258 280 258 280 0.98

5 12 2.7e-06 0.0011 22.2 0.2 1 21 286 306 286 307 0.94

6 12 1.9e-05 0.0076 19.6 1.9 1 23 314 336 314 336 0.97

7 12 4.6e-05 0.018 18.3 1.4 2 23 343 364 342 364 0.96

8 12 2.6e-06 0.001 22.3 0.6 1 23 370 393 370 393 0.98

9 12 1.5e-06 0.00058 23.1 0.5 1 23 399 421 399 421 0.99

10 12 1.7e-06 0.00066 22.9 3.4 1 23 427 449 427 449 0.99

11 12 6.9 2.8e+03 2.1 2.2 2 23 457 476 456 476 0.69

12 12 4.1e-05 0.016 18.5 0.4 1 23 482 505 482 505 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.012	4.7	10.8	5.1	1	23	170	192	170	192	0.98
2	12	9e-06	0.0036	20.6	0.2	1	23	198	220	198	220	0.97
3	12	0.0088	3.5	11.2	1.5	3	23	231	252	230	252	0.97
4	12	3.1e-06	0.0012	22.0	2.4	1	23	258	280	258	280	0.98
5	12	2.7e-06	0.0011	22.2	0.2	1	21	286	306	286	307	0.94
6	12	1.9e-05	0.0076	19.6	1.9	1	23	314	336	314	336	0.97
7	12	4.6e-05	0.018	18.3	1.4	2	23	343	364	342	364	0.96
8	12	2.6e-06	0.001	22.3	0.6	1	23	370	393	370	393	0.98
9	12	1.5e-06	0.00058	23.1	0.5	1	23	399	421	399	421	0.99
10	12	1.7e-06	0.00066	22.9	3.4	1	23	427	449	427	449	0.99
11	12	6.9	2.8e+03	2.1	2.2	2	23	457	476	456	476	0.69
12	12	4.1e-05	0.016	18.5	0.4	1	23	482	505	482	505	0.98

Sequence Information

Coding Sequence: atggaagaaataaaaaaatcttacaagCCTAATGAAACATGTCCAGAAGAGGTACTGTTAAGATGCTTAGTGTGCAATGTTGCAACATCATCTCAAACTCCAGCCAATCACTTCATCCATATGAATGACACTTTCCCCGTTACATCGACTAGGATTCCAGTGCGGACTAAGTTAGAGCAGATTTTACCTATCGACTTGCAACATTACTTAAAAGTTCATAACAGTTTTATGTGCAGGCGCTGTTTGACTCTTATTGAGACTGTCGAGTTGCTTGAAGTAAATCTGATAAGTGCAAAACAGACAATTAGTGACCAATTCTCTAAAACTATTCAGCTTTTGATGCCAGAAATAGAGCAGTTGATACAAGAGCAAAGCAACGTTTCTGAATCACTTGCCTGTGAAAAACAAACTAAGAAGATTGAACCGTTTGTGGAGTTGGAAAAAGCAGTGGAGAATGATAATATCGAGGTTACACATTCTGTTAGCGAATCTGAGAGTGCAAGTGAATTCCAGTGCTGCTATTGTTCCAAAATTTTATCATCACAGAAAACATACAATCAGCACCTTCAACAACACACTAatgagtttaatttttattgtgaacGTTGTGGTAAAGGATTCCCATTAAAATCAGCACTTGAAAGACATCTTAACTGGCATAATGGGATTGTCACAGCCGTTCAAACACTCTGTGAAATATGTGGTGACATTTTTTCCAGCAAACATCTTTTCTATTCCCACCAAATGAAATCTCATTCTAGGAATTATGCTTTCCAGTGTGAAACTTGTGGAAAAGGTTTTACAAGGAAAGTGTCACTGGAGATACATCGCCACAGACACACTGGGATACGTTCTTTCATTTGTGAATACTGTGGGcaaacttttatttcaaaatcaagTTTGAAAAGTCACATATCAATATGTACCAAAGACTTTCCATATAAATGTGACACATGTAAGAAGAGCTTTGCGACAGAAGGTCAGTTAAGAAGCCACAAGTCGCAGCATACTGGAATCTATAAGCTGACATGTTCAGTTTGTAAACAAGGTTTTAACAAACCTTCCCACCTCAAGGATCACATGGTGTCACATTCCAATGAGAAGAAGTACAAGTGTGCAGATTGTGACAAAGCCTTCAAGACTGTTTTTAACCTCAATTATCACTTAAAAGTAGTTCATAAACAAGAAAATGTGTTTAAGTGTAGTGTGTGTGGGAAAATCTTTGGTCAACAGAAATTATTGTCCGATCATATGAACTCGCACACAAAAGATAGACCATATAAATGTGAAAAGTGTGGTAAAAGTTTTGTGCACCAGACAACATTCATTACACATCTTAAGGTCCATACAGGGAAGGTAAAGAGCAAGACGTGTGCAATATGTGGTAAGAATATAAAGACTCGAATGAGTGTTCACATGCGGAGTCATACTGGTGAGAAGCCTTACAAGTGCACTTACTGCCCTTTAGCTTTCTCTGTTggtgtttcattaaaaaaacacatcaaagtTAAACATTGTAGGAGGCCGGCATGA
Protein Sequence: MEEIKKSYKPNETCPEEVLLRCLVCNVATSSQTPANHFIHMNDTFPVTSTRIPVRTKLEQILPIDLQHYLKVHNSFMCRRCLTLIETVELLEVNLISAKQTISDQFSKTIQLLMPEIEQLIQEQSNVSESLACEKQTKKIEPFVELEKAVENDNIEVTHSVSESESASEFQCCYCSKILSSQKTYNQHLQQHTNEFNFYCERCGKGFPLKSALERHLNWHNGIVTAVQTLCEICGDIFSSKHLFYSHQMKSHSRNYAFQCETCGKGFTRKVSLEIHRHRHTGIRSFICEYCGQTFISKSSLKSHISICTKDFPYKCDTCKKSFATEGQLRSHKSQHTGIYKLTCSVCKQGFNKPSHLKDHMVSHSNEKKYKCADCDKAFKTVFNLNYHLKVVHKQENVFKCSVCGKIFGQQKLLSDHMNSHTKDRPYKCEKCGKSFVHQTTFITHLKVHTGKVKSKTCAICGKNIKTRMSVHMRSHTGEKPYKCTYCPLAFSVGVSLKKHIKVKHCRRPA

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -