Sbis060449.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000335.1:839026-844075[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 18 0.32 1.3e+02 6.3 0.0 2 23 206 227 205 227 0.89 2 18 0.78 3.1e+02 5.1 1.2 1 20 233 252 233 256 0.87 3 18 0.04 16 9.1 0.6 1 21 266 286 266 287 0.93 4 18 0.073 29 8.3 4.1 2 23 294 315 294 315 0.95 5 18 0.0025 1 12.9 0.5 2 23 322 344 322 344 0.94 6 18 2e-06 0.0008 22.6 5.5 1 23 350 372 350 372 0.96 7 18 8e-06 0.0032 20.7 4.3 1 23 381 404 381 404 0.93 8 18 0.022 8.9 9.9 0.1 1 23 414 437 414 437 0.96 9 18 6.8e-05 0.027 17.8 1.2 1 23 458 480 458 480 0.94 10 18 0.00039 0.16 15.4 0.3 1 23 486 508 486 508 0.97 11 18 0.02 8.1 10.0 4.4 1 23 526 548 526 548 0.97 12 18 0.0012 0.46 13.9 3.3 1 23 554 576 554 576 0.98 13 18 1.6e-06 0.00062 23.0 0.4 1 23 590 612 590 612 0.99 14 18 1.4e-06 0.00057 23.1 0.5 1 23 618 640 618 640 0.98 15 18 0.0031 1.2 12.6 0.3 1 23 646 668 646 668 0.98 16 18 0.00086 0.34 14.4 3.4 1 23 674 696 674 696 0.98 17 18 8.6e-06 0.0034 20.7 0.9 1 23 702 724 702 724 0.99 18 18 3.4e-05 0.013 18.8 0.7 2 23 731 753 731 753 0.96
Sequence Information
- Coding Sequence
- ATGGCAGACATGTGCCTTAAAGCAGAGACCAAGCTGCAGGCCATGATGGTTGATAAACAATTCAGCTCCCAGCCTTTGCCTAGTACAGACTTGTTAAACCCAGTGCCAACACCAGACTTGGATTATTCGCAAGACAACTGTGATAAAGAAGTTGGATTGAATAACATGAGGACACCAAAGAGTTTATTTTGCTGTCCATTGTGCACATGTGGAAAGATGGTCACAAAGAGTGGGATCTACAAGATCAATAAAGATACTTGTTGCGATTTTgagagtaaaataaattttgacaaaagtaaaaaagaaagTGATACAGTTAAAGTAAGAAAAACACCTGATGAACTTGTTAAGGCTAAAATTGCCGAACAGATAGAGAAAGATAGCATCAAGATTGAAAGGgaccaaaataaaacaaatgggGAATCACACCATTTATTGAACGGACAAGATTGCACTTTAAAAATACCTGAATTGGATATGGATGTATTGTATAATGATACAAACTGTATTGTGGGGATGGAATTAGATTCCATTCCCGAGGAAGAAGATTGGGGCGGTTTGGggataaaaaaagaaactaaaataattgtaaagGGAGAAAACGACTGTAGTTTAGTTTGTAGACTGTGTGGAATTGAGTTTTCTGAACTGACAGCATTATTAGACCATTCTGAAGACCATTCGGACACAGCATGTTTTCCTTGTACAGTCTGCGATCAGTGGTTTGATAGTAAATCTTTTCTTGATTCTCACTTCTTTGAAAAACATTATGGACATTCATCGGTAGGTGCTCTTCACCAGTGTGAGGCTTGTGGTCTTTCCTTCAAGTCGGCTTTGAGGTTAGAGACACATTTGTGTGGTAGTGGTGGGGGATCGAACAGGTGTCTTCACTGTAACAAATCTTTCAGATCTGAAGCAAGGTTAGAATTCCATCAGAGATTCCATGAAGGGGCTCAGCCTGGCTATTGTGAAATTTGTCAAAAAACATTTCCAGATGAATTGAAACTATACAAGCACACAATGTATTTACACACTCAGAACAAAGGCCATTGTTGCGAGGAATGTGGTAAAGTATTTAAATCCAACAGTTCACTCAGGTACCATCAAAGATCGCACCAAGGTGAAGATATAATGAAACCTTTTACTTGCGAATACTGTGGTAAGTGCTTCATCAGGAAAAGCATGCTTAGAAGTCACTTTTTAAATACGCACAAAGACAAAAGTCAAGAAGGGAGCTGTTTCACTTGTAAACTGTGTTTTGAAGCTTTTCCCAGCACTGATCAAGCTGTTAGTCACATGGATGTAATGCACATGCCGGAATGCAGTGGTGAGACCACTTACAGCTTCGAGATGCACACGGTCAAAAGGCTCTACCTGTGCGAGTATTGTGAGAGGTGTTTTACAGACCCGTTGAATCTCAACGCTCATAGAGAGCAACACCCACCCACATTTCCTTATCAGTGCAAACTGTGTAATGAGGCATTTTCATCATCTGTACTACTGGGAGAACACAAGAAACTTCACATTGCCACTGGAGTACGTGACTACATGTCTGACTTCACGGTTCCAACTGTCTACATGTGTGAATATTGTGAGCGTTGTTTCATGACTTGCATTAAGCTGTCGGAACATCTCACTGTACATTTTGGAGAGGAACCTTACCATTGTCGATTTTGTGGCAGAAAGTTCAAAACTCAAGCTGAAGTCTCAGAACATCGGCTAACTCATGACCAGACTGATTCTCCTGTTGATGATTCCTACCGACCTTACGAATGTCACTACTGCCCCAAGTCCTTCGCAATAGAAGATGCGCTAGTGAAACATATAAGAATGCACACGGGGGAAAAACCATTTATCTGTGATCAGTGCGGTAAAGGTTTCTCACAGAGTTCTGGGCTCTATACTCATCAGAAAGTACACTCTGATGAACGACCATACCGGTGTGGCGTTTGCCCAAGAACATTCAAAATCAAGGGTGATCGAGATGTGCATGTTCGGAAACATTCTGGAGACAGGCCCTACAAATGTGATTTTTGTGGGAAGGCCTTCATGACCCAACATGTCTACAGTCAACATCGTAAGATTCACACAGGCGAGAGACCGTATAAGTGTGACGTGTGTGGCATAGCTTTCCGCAGGTCTCATGTGTTGACAGTACACAAACGTATCCACACCGGTGAGAAGCCCAATGTCTGTGACATTTGTGGCAAGAGATATCGCCAGAAAGGTGACATGTTGAAACATCGCAGGCTGCAGCATGGTATAGTTAAGGTTAGGATTCaaaaaattgagttttaa
- Protein Sequence
- MADMCLKAETKLQAMMVDKQFSSQPLPSTDLLNPVPTPDLDYSQDNCDKEVGLNNMRTPKSLFCCPLCTCGKMVTKSGIYKINKDTCCDFESKINFDKSKKESDTVKVRKTPDELVKAKIAEQIEKDSIKIERDQNKTNGESHHLLNGQDCTLKIPELDMDVLYNDTNCIVGMELDSIPEEEDWGGLGIKKETKIIVKGENDCSLVCRLCGIEFSELTALLDHSEDHSDTACFPCTVCDQWFDSKSFLDSHFFEKHYGHSSVGALHQCEACGLSFKSALRLETHLCGSGGGSNRCLHCNKSFRSEARLEFHQRFHEGAQPGYCEICQKTFPDELKLYKHTMYLHTQNKGHCCEECGKVFKSNSSLRYHQRSHQGEDIMKPFTCEYCGKCFIRKSMLRSHFLNTHKDKSQEGSCFTCKLCFEAFPSTDQAVSHMDVMHMPECSGETTYSFEMHTVKRLYLCEYCERCFTDPLNLNAHREQHPPTFPYQCKLCNEAFSSSVLLGEHKKLHIATGVRDYMSDFTVPTVYMCEYCERCFMTCIKLSEHLTVHFGEEPYHCRFCGRKFKTQAEVSEHRLTHDQTDSPVDDSYRPYECHYCPKSFAIEDALVKHIRMHTGEKPFICDQCGKGFSQSSGLYTHQKVHSDERPYRCGVCPRTFKIKGDRDVHVRKHSGDRPYKCDFCGKAFMTQHVYSQHRKIHTGERPYKCDVCGIAFRRSHVLTVHKRIHTGEKPNVCDICGKRYRQKGDMLKHRRLQHGIVKVRIQKIEF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -