Sbis098612.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010001472.1:162899-170612[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 4.6e-05 0.018 18.4 1.6 2 23 237 258 236 258 0.95 2 12 7.7e-07 0.00031 24.0 2.3 2 23 264 285 263 285 0.97 3 12 2.8e-08 1.1e-05 28.5 0.4 1 23 291 314 291 314 0.98 4 12 4.8e-06 0.0019 21.4 1.0 2 23 321 342 320 342 0.97 5 12 1.9e-06 0.00077 22.7 1.7 1 23 348 370 348 370 0.95 6 12 4.7e-07 0.00019 24.6 0.5 1 23 376 398 376 399 0.96 7 12 0.0004 0.16 15.4 0.7 2 23 406 428 405 428 0.95 8 12 0.00067 0.27 14.7 0.2 3 20 437 454 435 457 0.92 9 12 0.00018 0.071 16.5 0.2 2 23 464 486 463 486 0.96 10 12 0.0026 1 12.8 2.4 1 23 492 514 492 514 0.95 11 12 3.3e-07 0.00013 25.1 0.6 1 23 520 542 520 542 0.98 12 12 0.33 1.3e+02 6.2 1.6 1 11 548 558 548 567 0.91
Sequence Information
- Coding Sequence
- ATGAAAAGTGAAGTAAAGCTAAACAAAGAAAGGTTTACTGTTCTGATTGGGGTAAATATGGATGGAACCTTTGCTTATGATTGGAAAGTCAATCAGTCCCCGaATGGCGTTTATATCCAAGATACTTCATGGGAAGACAACGTACAAAGCTTTGTTCCTCTTCAGAACTGCGATTCTTTAACCGGAACTGTGACCATTTCAGCTACTCaggaGGTGAccaatgttttattagaaaacCCCCAACAAACGTATGTTAATTTAACAAATGGAGGTAAAGAGGAGGAAGAGAAATCACTGTTGGACTTGACTCAACAAGATGAGAGGATATCAGAACAACCTGATGGTCAGACACAGAGTAATGAGGCTTCAGTTGAAAGTGGCCGTGTGTTAAGGAAGAATGTAGTGGGTAGGGACAAACCTATAGACaattattatgaacatttttttagtcGAGCTGATGGTCTAgattttgaaaattcaaaatgCTCCGAAAATGCTaaggatttttataatttagatcAGAACAAAGGAAGCAGTTCTGAAATAGTTAGTAATGAAATTAAAAGCTTTGAACATGAGCATAGTAAAAGAACTGACTTGGAGGAAACTGTAGAAGACGAGGATTGTAATGAAAATGAGCCGGATTTTGTCAATAACACATTAAATAAAGAAGTTGCAACATCAAAAACAAAACCAGTTACTATTACCTATTGTGAAGATTGTGACAAACACTTTGATAAACCTGTCAGCTTGAAGAAACATCAAGCTCAGCACACTAAACAACCCTTAAAGTGctcattttgtaataaaagtttCAGACAAAGTTGGTATTTGAACTCACATATCAGAACACATACTGGCGAGCGTCCATTTACGTGTTCTATCTGTTCCAAGGCATTTACGGACAAAAGTGCCTTGAACGCTCACATGCGGGTTACCCACTTTACAGAAAAAACTCAGGTATGTACGTTTTGCGGAAAAGCATTCAAAATGAAGAAACAACTTGAAAGGCATGAAAGAATACACACCGGACATCATTATCATCGGTGTGAAGTTTGTGGAAAATTATTCActcaaaaaagtaatttaatgaagCATTTAGTTTTACATTCAGGTGAAAAACCATATCCTTGTCCTTTCTGTGAAAAACCATTTGCTCAGAAAGATAATttgaatattcatattttaagaCACCATTCGCAACAAAATCCCGTTGTTTGCGATATTTgtggaaaattatttaaaaataaaatgactcTAATGGGCCATAAGAAGAGCAAACATTCTGAAAGTGTTAAACAGATCATATGTGAAGTATGTGGCAAGTTTTTTCCTGATCGGAATTCATTGAACTCTCATAAATGGGTCCACAATTCAGGTGCACCGATACAGTGTGATGTGTGTGGGAAGAGCTATCCTCACGCTAGAGCCGTTCGAGTGCACAAACGGATAGTGCACTCAGAAGTAAGAAAGTATTGTTGTGATATTTGTGGTATAGGTTTTAAAACTGGACAGACATTAAAACATCATAAAGTGGTTCATACCGGGGAGCGTGCTTTCAGCTGTGAAGAATGTGGACGATCATTTGGACAGAAAACTGCTTTAAAAACTCATCAGCGAATCCATTCTGGTGTTGAACCTTATTCTTGCCCTCGGTGTGGTGAATCTTTTAAATGGAAACAAACTTGTGATAAACATATTGTTAAGTGCGTTGGGAAAACTTCTAGGGACACTATTGCTATATCAGAAAATCAAATTATGCCATCGTGA
- Protein Sequence
- MKSEVKLNKERFTVLIGVNMDGTFAYDWKVNQSPNGVYIQDTSWEDNVQSFVPLQNCDSLTGTVTISATQEVTNVLLENPQQTYVNLTNGGKEEEEKSLLDLTQQDERISEQPDGQTQSNEASVESGRVLRKNVVGRDKPIDNYYEHFFSRADGLDFENSKCSENAKDFYNLDQNKGSSSEIVSNEIKSFEHEHSKRTDLEETVEDEDCNENEPDFVNNTLNKEVATSKTKPVTITYCEDCDKHFDKPVSLKKHQAQHTKQPLKCSFCNKSFRQSWYLNSHIRTHTGERPFTCSICSKAFTDKSALNAHMRVTHFTEKTQVCTFCGKAFKMKKQLERHERIHTGHHYHRCEVCGKLFTQKSNLMKHLVLHSGEKPYPCPFCEKPFAQKDNLNIHILRHHSQQNPVVCDICGKLFKNKMTLMGHKKSKHSESVKQIICEVCGKFFPDRNSLNSHKWVHNSGAPIQCDVCGKSYPHARAVRVHKRIVHSEVRKYCCDICGIGFKTGQTLKHHKVVHTGERAFSCEECGRSFGQKTALKTHQRIHSGVEPYSCPRCGESFKWKQTCDKHIVKCVGKTSRDTIAISENQIMPS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -