Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010000085.1:2567914-2606132[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.00014 0.057 16.8 0.7 1 23 305 327 305 327 0.96

2 18 7.6e-05 0.03 17.7 1.2 1 23 360 383 360 383 0.95

3 18 0.00071 0.28 14.6 0.3 2 23 391 412 390 412 0.96

4 18 0.00091 0.36 14.3 3.8 1 23 418 440 418 440 0.97

5 18 1.6e-05 0.0064 19.8 5.8 1 23 446 468 446 468 0.99

6 18 7.7e-05 0.03 17.7 1.8 2 23 475 496 475 496 0.96

7 18 1.4e-06 0.00056 23.1 5.3 1 23 502 524 502 524 0.98

8 18 3.1e-07 0.00012 25.2 1.9 1 23 530 552 530 552 0.98

9 18 9e-05 0.036 17.4 6.7 1 23 558 580 558 580 0.97

10 18 1.2e-05 0.0049 20.2 6.7 1 23 586 608 586 608 0.98

11 18 2.3e-06 0.00092 22.4 2.8 1 23 614 636 614 636 0.98

12 18 1.3e-05 0.0053 20.1 8.1 1 23 642 664 642 664 0.98

13 18 4.2e-06 0.0017 21.6 7.3 1 23 670 692 670 692 0.98

14 18 2e-05 0.0078 19.5 5.8 1 23 698 720 698 720 0.98

15 18 1.8e-05 0.0071 19.7 3.5 1 23 726 748 726 748 0.97

16 18 8.4e-05 0.033 17.5 0.4 1 23 754 776 754 776 0.98

17 18 0.14 54 7.5 8.3 1 23 785 807 785 807 0.97

18 18 5.6e-07 0.00022 24.4 0.3 1 23 812 834 812 834 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.00014	0.057	16.8	0.7	1	23	305	327	305	327	0.96
2	18	7.6e-05	0.03	17.7	1.2	1	23	360	383	360	383	0.95
3	18	0.00071	0.28	14.6	0.3	2	23	391	412	390	412	0.96
4	18	0.00091	0.36	14.3	3.8	1	23	418	440	418	440	0.97
5	18	1.6e-05	0.0064	19.8	5.8	1	23	446	468	446	468	0.99
6	18	7.7e-05	0.03	17.7	1.8	2	23	475	496	475	496	0.96
7	18	1.4e-06	0.00056	23.1	5.3	1	23	502	524	502	524	0.98
8	18	3.1e-07	0.00012	25.2	1.9	1	23	530	552	530	552	0.98
9	18	9e-05	0.036	17.4	6.7	1	23	558	580	558	580	0.97
10	18	1.2e-05	0.0049	20.2	6.7	1	23	586	608	586	608	0.98
11	18	2.3e-06	0.00092	22.4	2.8	1	23	614	636	614	636	0.98
12	18	1.3e-05	0.0053	20.1	8.1	1	23	642	664	642	664	0.98
13	18	4.2e-06	0.0017	21.6	7.3	1	23	670	692	670	692	0.98
14	18	2e-05	0.0078	19.5	5.8	1	23	698	720	698	720	0.98
15	18	1.8e-05	0.0071	19.7	3.5	1	23	726	748	726	748	0.97
16	18	8.4e-05	0.033	17.5	0.4	1	23	754	776	754	776	0.98
17	18	0.14	54	7.5	8.3	1	23	785	807	785	807	0.97
18	18	5.6e-07	0.00022	24.4	0.3	1	23	812	834	812	834	0.98

Sequence Information

Coding Sequence: ATGTCAGTGTATGGATTGCAGAGTCCAAGGCTAGACAAAGATGGAGGACAACCATGCTTGACACCAGTGAACATGGGTGTGGAGGCTATGACTTTAATACAGCACAACCAGGCCCAGCAGATACCGGTTAGTGCGGTGGGTGGTATGACCACACTGACTCTGCCTGCCCCTCAGCTGGCCACCGTTGCCCTTCCCTCAACAGCCAACCCGGCTGCAGTGCCTGTGTCTTCTGCTGCTAGCACTGTCCAGCTACAAGACAAGTCTAGTTGTGTTACAGAGCAGTGCGGCAACAACCAGGTGCACTGTCAGGTGCAGTGTGACTTGACACTGGTTCAGCCTCAGCCGCCCACCCTCCATGTGACTGCAGCGCAGGGCATAGCTCTGTCTGCTGAGCAGCACCAGCAACTGCAGCATCAGATGAATGCGAGTGGTATGGAACAACCATTTAAAGTTCTACCTACCAATTTACTCAACAACTTAACTCCCGTCACATTCAAGTATGTGGACGATGCAACTGCTCGGGCTGGACTCCCTGACGATAACAACATTAATGTACTGCAACACCAAGCCTTGAATCAAGGCCAACAGATAGAACTGGTGGTACAGGAGGTTAAAGTGGAAGAAAACAAGAATAAGGAAGACAATGTTGTTGGCAGTTACCAAAATGATAAACAGCAGGAGCAGACCCAACCAACCCATCAACAAATATTGGTGGAAAAGCCACTTGGGGAACATATTGAGTACAAACCTGTGAATGTGGAGGATATCAACCAACTCCTGGCATACCATGAGGTGTTCGGCAAGTTGCAGGCAGGGACCGTGAGCACAGGAGTGGGGACAACTAACGATGAAGGAGGCCCAGTCAAGAGCCCGGACTCCGAGGTCAGCCCCGGATCCTCCCCACCTGTGGTCCATGCTTGCGACGTCTGTCCCAAAGTCTTCCCTTACCGATATCAAATGATTGTACACCGGCGTTACCATACAGAGCGCAAACCGTATCAGTGTCAGAGCGCAAACCGTATCAGTATCATGTATGTGTTGTACAACCCTTTATTGTACCATACAGAGCGCAAACCTTATCAGTGTCAGGTGTGTGGGAGATCATTCGACAGCAGCGAAGAACTTAGTGAACATGGAAAGAACTGCCATCAGGAAAACAACTCTATGCTTACCTGCCAGGTGTGCTTCCACGTTTTTGCAAGTGCAGGCAGCCTTGAGCGTCACGCTCGTGGCCACTGCCTAGAAAAGCCATACCAGTGTGGGGTTTGCTCCAAGGGGTTTGGTCGTAAGGAGCATCTGGAAAACCACTGTCGTAGCCACTCAGGGGAGACCCCATATCGCTGCCAGTTCTGTGATAAGAGCTTCAGTCGGAAGGAGCACATGGTTAACCACACCCGCAAACATACCGGTGACACGGAGAACCGGTGTGATATTTGTAAGAAAGCTTTCACTCGCAAAGAACACTTTGTGAACCACGTGCTGTGGCATACAGGAGAGACGCCGCACACGTGCAACCTCTGTGGCAAGAAGTACACTCGCAAGGAACACCTGGCCAACCATATGCGCAGTCACGCCAACGACACTCCGTTCCGCTGTGAGGTCTGTGGCAAGGCGTTCACACGTAAAGAACACTTCACCAACCACATCATGTGGCACACAGGCGAAACACCTCACAGATGTGACTTTTGCTCTAAGACGTTCACTCGAAAAGAACACCTTCTGAACCATGTAAGACAACACACCGGAGAGTCCCCTCATCGCTGCAACTACTGCACCAAAAGCTTCACTCGCAAGGAACACCTGGTGAACCATGTCCGCCAGCACACGGGAGAGACGCCCTTCCAGTGCCAGTTCTGCCCCAAGGCTTTCACCCGGAAGGACCACCTGGTCAACCACGTGAGACAACATACAGGCGAGTCCCCTCACAAATGTACCTTCTGCACCAAGAGCTTCACTCGGAAAGAACATCTTACCAATCATATCCGCCAACACACTGGTGAATCACCACACAAGTGCTCATACTGTTCCAAGTTCTTCACAAGAAAGGAGCACCTGACCAACCACATCAGAATCCACACAGGCGAGTCACCTCATCGTTGTGACTTCTGTAGCAAGACATTCACCAGGAAGGAACACCTAGTGAGTCATCTGCGAGTCCATTCAGGCGACACGGAGCACAACTGTAATGTCTGTAGTAAGCCCTTTGCCAAAAAGGAGCACCTGGTGAATCACATGCGGAGTCACACAGGTGAGCGACCTTACACGTGTGCCGAGTGTGGTAAGTCGTTCCCGCTCAAAGGCAACCTGCTGTTCCACCAGAGGTCTCACAATAAAGGTACTGCAGAAAGACCTTTCTGCTGTGACCAGTGCCCCAAGAACTTCACTTGTAAAGGCCACCTGGTATCACATAAACGGAGTCATTCGGGGACACCGTTCATCTGTGAACAGTGTGATAAAAGTTTCACTAGCAAGGACAGTCTGGTGGAGCACATCAAAGTTCACGAGGACGATATTGAAGAAGTTGACCCGTCAGGAGAGGAGGGTCAACAGGTGCAACCACCCCCGCCACCTCCACTGACACCCGCGCCCACACATACTCTTCACTCCATGGTCTCCGCATCAACACAACCACCACAACTTCACTCGCCTGTTGTCGTCCCAATGCCCAACGCTGTTCTTGCCACTTACTAA
Protein Sequence: MSVYGLQSPRLDKDGGQPCLTPVNMGVEAMTLIQHNQAQQIPVSAVGGMTTLTLPAPQLATVALPSTANPAAVPVSSAASTVQLQDKSSCVTEQCGNNQVHCQVQCDLTLVQPQPPTLHVTAAQGIALSAEQHQQLQHQMNASGMEQPFKVLPTNLLNNLTPVTFKYVDDATARAGLPDDNNINVLQHQALNQGQQIELVVQEVKVEENKNKEDNVVGSYQNDKQQEQTQPTHQQILVEKPLGEHIEYKPVNVEDINQLLAYHEVFGKLQAGTVSTGVGTTNDEGGPVKSPDSEVSPGSSPPVVHACDVCPKVFPYRYQMIVHRRYHTERKPYQCQSANRISIMYVLYNPLLYHTERKPYQCQVCGRSFDSSEELSEHGKNCHQENNSMLTCQVCFHVFASAGSLERHARGHCLEKPYQCGVCSKGFGRKEHLENHCRSHSGETPYRCQFCDKSFSRKEHMVNHTRKHTGDTENRCDICKKAFTRKEHFVNHVLWHTGETPHTCNLCGKKYTRKEHLANHMRSHANDTPFRCEVCGKAFTRKEHFTNHIMWHTGETPHRCDFCSKTFTRKEHLLNHVRQHTGESPHRCNYCTKSFTRKEHLVNHVRQHTGETPFQCQFCPKAFTRKDHLVNHVRQHTGESPHKCTFCTKSFTRKEHLTNHIRQHTGESPHKCSYCSKFFTRKEHLTNHIRIHTGESPHRCDFCSKTFTRKEHLVSHLRVHSGDTEHNCNVCSKPFAKKEHLVNHMRSHTGERPYTCAECGKSFPLKGNLLFHQRSHNKGTAERPFCCDQCPKNFTCKGHLVSHKRSHSGTPFICEQCDKSFTSKDSLVEHIKVHEDDIEEVDPSGEEGQQVQPPPPPPLTPAPTHTLHSMVSASTQPPQLHSPVVVPMPNAVLATY

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -