Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010000493.1:20783-32959[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0054 2.2 11.8 1.8 2 23 147 169 147 169 0.96

2 16 1.9e-06 0.00078 22.7 0.5 1 23 175 197 175 197 0.97

3 16 1.1e-05 0.0045 20.3 1.6 2 23 204 225 203 225 0.97

4 16 1.4e-06 0.00057 23.1 3.1 1 23 231 253 231 253 0.98

5 16 4.6e-06 0.0018 21.5 4.1 1 23 259 281 259 281 0.99

6 16 2.1e-06 0.00082 22.6 1.0 1 23 287 309 287 309 0.98

7 16 0.00085 0.34 14.4 4.6 1 23 315 337 315 337 0.99

8 16 3.9e-05 0.016 18.6 5.5 1 23 343 365 343 365 0.98

9 16 0.00021 0.085 16.3 1.3 1 23 371 393 371 393 0.98

10 16 4.3e-06 0.0017 21.6 3.1 1 23 399 421 399 421 0.98

11 16 8.8e-08 3.5e-05 26.9 0.9 1 23 427 449 427 449 0.98

12 16 1e-07 4.1e-05 26.7 2.0 1 23 455 477 455 477 0.99

13 16 8.2e-06 0.0033 20.7 2.1 1 23 483 505 483 505 0.97

14 16 2.9e-06 0.0011 22.2 0.6 1 23 511 533 511 533 0.97

15 16 4e-07 0.00016 24.8 0.7 1 23 539 561 539 561 0.99

16 16 0.00013 0.05 17.0 0.6 1 23 567 590 567 590 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0054	2.2	11.8	1.8	2	23	147	169	147	169	0.96
2	16	1.9e-06	0.00078	22.7	0.5	1	23	175	197	175	197	0.97
3	16	1.1e-05	0.0045	20.3	1.6	2	23	204	225	203	225	0.97
4	16	1.4e-06	0.00057	23.1	3.1	1	23	231	253	231	253	0.98
5	16	4.6e-06	0.0018	21.5	4.1	1	23	259	281	259	281	0.99
6	16	2.1e-06	0.00082	22.6	1.0	1	23	287	309	287	309	0.98
7	16	0.00085	0.34	14.4	4.6	1	23	315	337	315	337	0.99
8	16	3.9e-05	0.016	18.6	5.5	1	23	343	365	343	365	0.98
9	16	0.00021	0.085	16.3	1.3	1	23	371	393	371	393	0.98
10	16	4.3e-06	0.0017	21.6	3.1	1	23	399	421	399	421	0.98
11	16	8.8e-08	3.5e-05	26.9	0.9	1	23	427	449	427	449	0.98
12	16	1e-07	4.1e-05	26.7	2.0	1	23	455	477	455	477	0.99
13	16	8.2e-06	0.0033	20.7	2.1	1	23	483	505	483	505	0.97
14	16	2.9e-06	0.0011	22.2	0.6	1	23	511	533	511	533	0.97
15	16	4e-07	0.00016	24.8	0.7	1	23	539	561	539	561	0.99
16	16	0.00013	0.05	17.0	0.6	1	23	567	590	567	590	0.98

Sequence Information

Coding Sequence: ATGGATCTTGGAAGTAACTCAAACCTAGAGCTTCTGTCAGTAAAGATAGAAAATGAAGACTCAGAGGATAATGAgGTGTGGAATTTAGCAGCGAATAATGATGTAGATATATCAGAAGAATTTTCTAGTCAAATTAAAGAAGAAGAATATGATGTTGAAAGCTGTATTGATGAgaaGCCTGAGTTGGAGAATGAATTTGGCAACAATGAAGATTTACTGGGCATCAGCAATGAGTTTACAACCTCAGAGGATCAGATGTACTCCAACCATTCATTTTCTGGTAACGTTCTCGGATTTCCATCACCCAGTATGGACAAGGTGTTGGCATACAAGAGAATTATTAACTCCATAGAAGATTCTCCTAAGGTTATCCATTCAGAAAATGGGCTGGACCAGTTGGGGAGTGTAACACAATCATCAGACTCTACTTCAGATAATGTATGCCGTATATGTCACTCATCTTTTTATTCAAGAGCAACTCTCTCAATTCACATTCAGAGAAAACACACACTGCAGTATCCGTACGAGTGCACAACATGTGGAAAGGGGTTCAGAAGAGAGGCAACGTTGAGGAGGCATGAAGAAATGCATTCAGAAGATGGCGTGACTGTGTGCCATATCTGTGGAAAAAACTATAGTTCTGTGTACACCTTAAGAGTGCACCAACGTCAGCATACAGGGAGAAAGCCCTTTGTTTGTCCTGTGTGTCAAAAAGCATTTATTGATCATAGTTGTTTGAGAAAACACCAAAGAATCCACTCAGATGATAGCCCATTTAGATGTCACTTGTGTGGTGCGACGTTTAAACAGACTTCTTCACTCAGAAAACATGAGAAAACACACTTTGGGAAACGGCTCTTTGAATGTGAGATttgtaaaaaaaggttttatgaaAACAGTTCCCTCAAACGACATTTAATTGTCCACACAGGTGTGAAAGCCTACACTTGCAGCATTTGCCACAAATCTATGTGTAATCTTAACACATTGCAGATTCACCAGCGAATTCATACAGGGGAGAGACCATACTGTTGCCagatatgtaaaaaaacattCAAAGACACAAGTACATTTGCAAAGCACAGACGAGTTCACTCTTCAGAGCGACCTTTTAAATGTGATTTATGTGAAaaatcttttaaagaaaaaagaggCATGCGATTGCATTTACTTAGTCATTTAGGAGTTAAAccttttcattgtgaaatatgtGATAAATCTTTCGTCAATAGACAGTATTTGATTAAGCATACTAAAATGCACAATGGTATACTTGAttttgtgtgtaatatttgtCACAAGGCATTTACAACTCCAGGAAATTTGAAACTTCACCTTAAAGTACACACTGATGAGAAACCATACACTTGTGAAGTGTGTAAAAAGTTCTTCCGAGATGCTAGTAGTCTGAAGAAACACTTACGAATGCATACAGGTGAACGCCCTTATGTATGCCATTTGTGTGACAAGACATTCCGTAAAAGTGAAagtttaaattatcatttactTGCACACAGCGGTGAAAAGCCATATAACTGTCCTGTGTGCCCTAAACGTTTTCGAAACAGGATAAATCTTAAATCACACTCTATGATACACACAGACAGCAAACCTTACCGATGCCCCCGGTGTCCAAGGGCGTTTCGGCAGAAATATAATCTGATAACACACGAACGGATACACACTGGTGAGAAGCCATATGAATGTGATGCATGTTACCGAAGATTCACACAAGTTGGTCAATTGAAAATTCACATTAAAACCTATCATTCATGA
Protein Sequence: MDLGSNSNLELLSVKIENEDSEDNEVWNLAANNDVDISEEFSSQIKEEEYDVESCIDEKPELENEFGNNEDLLGISNEFTTSEDQMYSNHSFSGNVLGFPSPSMDKVLAYKRIINSIEDSPKVIHSENGLDQLGSVTQSSDSTSDNVCRICHSSFYSRATLSIHIQRKHTLQYPYECTTCGKGFRREATLRRHEEMHSEDGVTVCHICGKNYSSVYTLRVHQRQHTGRKPFVCPVCQKAFIDHSCLRKHQRIHSDDSPFRCHLCGATFKQTSSLRKHEKTHFGKRLFECEICKKRFYENSSLKRHLIVHTGVKAYTCSICHKSMCNLNTLQIHQRIHTGERPYCCQICKKTFKDTSTFAKHRRVHSSERPFKCDLCEKSFKEKRGMRLHLLSHLGVKPFHCEICDKSFVNRQYLIKHTKMHNGILDFVCNICHKAFTTPGNLKLHLKVHTDEKPYTCEVCKKFFRDASSLKKHLRMHTGERPYVCHLCDKTFRKSESLNYHLLAHSGEKPYNCPVCPKRFRNRINLKSHSMIHTDSKPYRCPRCPRAFRQKYNLITHERIHTGEKPYECDACYRRFTQVGQLKIHIKTYHS

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -