Basic Information

Insect: Stictocephala bisonia
Gene Symbol: -
Assembly: GCA_035578905.1
Location: JAQJVL010000754.1:85911-112598[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 5.3 1.9e+03 1.6 0.0 23 32 149 158 148 162 0.89

2 8 5.6 2.1e+03 1.5 0.0 23 32 183 192 182 196 0.90

3 8 5.6 2.1e+03 1.5 0.0 23 32 217 226 216 230 0.90

4 8 5.6 2.1e+03 1.5 0.0 23 32 251 260 250 264 0.90

5 8 4.2 1.5e+03 1.9 0.0 23 32 285 294 284 300 0.86

6 8 4.2 1.5e+03 1.9 0.0 23 32 319 328 318 334 0.86

7 8 5.6 2.1e+03 1.5 0.0 23 32 353 362 352 366 0.90

8 8 5.6 2.1e+03 1.5 0.0 23 32 387 396 386 400 0.90

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	5.3	1.9e+03	1.6	23	32	149	158	148	162	0.89
2	8	5.6	2.1e+03	1.5	23	32	183	192	182	196	0.90
3	8	5.6	2.1e+03	1.5	23	32	217	226	216	230	0.90
4	8	5.6	2.1e+03	1.5	23	32	251	260	250	264	0.90
5	8	4.2	1.5e+03	1.9	23	32	285	294	284	300	0.86
6	8	4.2	1.5e+03	1.9	23	32	319	328	318	334	0.86
7	8	5.6	2.1e+03	1.5	23	32	353	362	352	366	0.90
8	8	5.6	2.1e+03	1.5	23	32	387	396	386	400	0.90

Sequence Information

Coding Sequence: ATGAAAAGTCGCCCTTATGACACCATTCTTAAACACTATTATGAAAGATTTAAAAGTAAGTTAACAACTGACCTTGATCATAGGAAAAATCAATACTATAAGAATTTACTTGATCTATGTGGTAGTCCTAAAGATAAATGGCAATTGATCAACAAACTAACTGGTAAGCAGTTTAGGTCAATTGATAAAATTACATCTAGTTCTGGACAGGCCTTTGACTTGGTGCGACATGATCTCCTCCTGTTCAAATTGGAAGCAGCCGGTGTACGGGGTCCTGCTCTTGGTTGGTTCTCCTCTTTTCTCAAAGATCGAAAACAACAAGTTCGAATAAAAAGCGTGTTAAGTGAGGAGTGCACTGTCAATATTGGTATTCCTCAAGGCACGCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGATTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAAGCTTCATGTGCTAACTGCGTCAGTTGCTACATTCGTGATTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTATATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGGAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTATATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGGAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAATCTTCATGTGGTAACTGCGTCAGTCGCTACATTCATGGTTCCTCAACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTAAGTCAACTGTACTGTGCAATCTTCATGTGCTAACTGCGTCAGTCGCTACATTCGTGGTTCCTCTACATTTGGCCTCGGTCTGTGATTACTTTGACATTAGTGGAAATCTCAATCTTCTCGAGACGCACTTTTCGGGATGCATCATGTGTGACTCAGGGCTGGCTGGAGCAGGTCTCGCCGGTGAAAGCTCTCGGCCAAGGGCGAACGGGGGACTGGAACCTAGCCAGACACAGTGTCACTATTTCGAGGGTGAAATGGGCTATCAACAATTTTAG
Protein Sequence: MKSRPYDTILKHYYERFKSKLTTDLDHRKNQYYKNLLDLCGSPKDKWQLINKLTGKQFRSIDKITSSSGQAFDLVRHDLLLFKLEAAGVRGPALGWFSSFLKDRKQQVRIKSVLSEECTVNIGIPQGTLHVLTASVATFVIPLHLASVCDYFDISKSTVLCKLHVLTASVATFVIPLHLASVCDYFDISKSTVLCNLHVLTASVATFVVPLHLASVCDYFDISKSTVLCNLHVLTASVATFVVPLYLASVCDYFDISKSTVLCNLHVLTASVATFVVPLHLASVCDYFDISKSTVLWNLHVLTASVATFVVPLYLASVCDYFDISKSTVLWNLHVLTASVATFVVPLHLASVCDYFDISKSTVLCNLHVVTASVATFMVPQHLASVCDYFDISKSTVLCNLHVLTASVATFVVPLHLASVCDYFDISGNLNLLETHFSGCIMCDSGLAGAGLAGESSRPRANGGLEPSQTQCHYFEGEMGYQQF

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -