Sbis064373.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000386.1:92369-92923[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 5.1e-08 1.9e-05 27.2 0.0 3 35 22 55 20 61 0.92 2 2 8.9 3.2e+03 0.9 0.0 2 14 96 108 95 114 0.88
Sequence Information
- Coding Sequence
- ATGAATCATCAAGAGGAGGAAGAAGTAGTCAAGAGAAGTTATTGTAGATTCAAATACAAATTAGAAGACTTGAAAAAAGCTATAGAAGAAGTGAAGGCAGGAAAAACGTCCATCAACAAAGCTTCTCAGGTATCCAGCATTCCCAAAGGTACCTTAGTTAATAAACTTAACTCCGATGATCCTCTTTTAAGAAAAATGGGACCACCAAGTGTTCTTTCACAAGAAGAGGAAAAACGACTGAAAGATTGGATTCTTGGTAAAGCCAGACTTGGTTTTCCAATGCATGAAGAAGATTTGAAGGACGCAGTACAAAAAGTACTGAATGATTCTGAAAGAACAACTGTTTTTATCAACAACAGACCTGGGAAAAAATGGGTCAAGCTTTTTCTAAAAAGACATCCTGAAATAAGCAAGAGAAACACAGAGTTAATATCAAAGGCTACAGCTGCAGTAACAGAGGGAAAACGTAGAGAATGGTTTGACGAGCTTACGTGTTACTTGAAGAAGAAAACGCCGAAGACGTCCTTAATGATCCTAAAAGAGTTTACAATTTAG
- Protein Sequence
- MNHQEEEEVVKRSYCRFKYKLEDLKKAIEEVKAGKTSINKASQVSSIPKGTLVNKLNSDDPLLRKMGPPSVLSQEEEKRLKDWILGKARLGFPMHEEDLKDAVQKVLNDSERTTVFINNRPGKKWVKLFLKRHPEISKRNTELISKATAAVTEGKRREWFDELTCYLKKKTPKTSLMILKEFTI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01372273;
- 90% Identity
- iTF_01372280; iTF_01372273;
- 80% Identity
- -