Sbis106544.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Stictocephala bisonia
Gene Symbol
RTase
Assembly
GCA_035578905.1
Location
JAQJVL010002003.1:71825-75981[-]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 8.9e-10 3.2e-07 32.9 0.0 4 35 339 371 336 375 0.91

Sequence Information

Coding Sequence
ATGAAAAACAAGAAATCGGCAGGATCGGATGAGTTGTCACCCTccttattaaaagaaatagtacataTAGTTGCAAAGCCTCTGTCTCATCTCATAAATTGTTCGTTCCAGCAAGGCCAATTTCCGACCAAGCTAAAGACTGCTGTTGTAAGACCAATACCAAAGCGAGCTAATGACTGTAAATATGATAACTTTAGACCGATAACCATAGTGTCAACAatatcaaagatatttgaaaaagcagCTCTCACATGGCTAACTGATTTCttggaaagaaaagaaatactatttaaaaaccaatttggctTTGTAAAGGGTAAAACAACTACCAACGCCATGTTCTGTATGATTTCAGATATCGTCAAAGCCCTTGATAGAGGCGATTTTACATCTGGAATATTCTTTgacttaagtaaggcatttgacactgtAAACCATGACCTTCTACTAAATAAACTGAACTCGATTGGCGTAAGAGGGCTGACACTTGAATGGTTTTCCTCATATTTACAGGACCGATGTCAGTATGTAGAGGTGTCTGGAGTGGACTCAATGGGATGCTCTCGGCCTTATGCCTCATCACTGGGTAATATCACTTGTGGTGTCCCCCAGGGGTCTGTCCTCGGTCCCGTTCTGTTCCTCATCTATATCAACGACTTATCTTCTTGCCTTGGGGATGGGACGGTGTGCCTATTTGCGGATGACACGTCCCTGACAGTGTCCGGCTCCACAAGGGAAGACCTTGAATTGAATACTTTTGTTCAATCTAATAACCTCCTGCAgtggtttgatgaaaatttgcttaaattgAATACAGGAAAAACTCATTTCTTGAACTTTTCAATCAGAAATAACGAGGAAACTCAGTTTAAGTTACTTTTGGGTGATGTTGAGCTAGAAGCTActcaccaaactaaatttttaggcttAACCTTAGACGACAATGTTTGTTTCCATGCCCATATTGACATTGTCTGTAGTAGAaTGTCTCAACGCAAGACATGGGACAGAGTCAAGATGAAGGAGGCTGTCACAGCTGTGAAAAATAAGGAGATGGGTCTTCTAAAAGCTTCAAAAATATATGACGTTCCTAGATCTACTTTGAAAGACTATGAAAAAAAACCCGTCGAAGATATCCAAGAACTTATTGACGTACCTTTAGGTCGTAAACCAATTTTGTCCAAAGAACTGGAAGACGAATTAGTAGACTATTGTTTGCAAATGGAAAGTTCTTATTATGGCCTGACTTCGAGGGATCTAAGGCGGATGGCCTTTCAGCTAGCAATGAGAAATAATATTCCTCATCCTTTTTCTGCTGAAAAAGAAAGTGCTGGCAGGAAGTGGCAGCGACTTTTTTTCAAGCGACACCCTGCCCTAGTATTCAGAAAACCTCAGCCGTTGTCCTTGGCAAGAATACAAGGTTTTACAAAAGAAAACGTagacaattttttttccatattGAAACCAGAACTCGAAAAAGTCAAGTCTTCAGCAGCTAGGGTATTCAATGTTGATGAGACTGGCGTCACCACAGTCcaacataaaagtttaaaaatcatTACTGTTAAAGGTAAAAGGGAAGTACACAAACTTTCATCTGCTGAAAGGGGGCGACTTGTGACTATGGTGACGTGCATGTCTGCCTCAGGTATTTTTGTACCACCTTTGCTTGTATTTCCGCGTAAAAGGATGAAAAAAGAGCTGCTCGATGGTGCTCCCCCTGGAACGATTAACGATTGTCACATTTCCGGCTGGATCcaaactgatatttttacaggaTGGTTTGGTCATTTTGTCAATTTTGTTAAGGCTTCAAAAGATGATCCCGTTGTTCTCGTATTTGATGGACACACAACTCATACTAAAAACATCGATGTTATTGATATAGCACGGGAAAATGGAGTGTCACTTGTCTGTTTACCACCACACTCATCTAATCGTATGCAGCCGCttgataaaacatttatgaaacCGTTCAAGACGTTCTATGCACAAGAGATAGAAAACTGGTTGACATCTCATCCGTTTCGAGCAGTTACAATGTATCAAATAGGCCAACTGATTGGAAACGCTTACATTAGAGCAGCTACCATGGATATTGCAATTAAAGGCTTCCAGTGCACAGGAATTTTACCCTACAATCCACAGGTCTTTTCTGAAGTAGACTTTTTGTCTCACCGAAGTGAAGTCGCTGAAGAGGAAGCCAGAGAGAATGCCGTTGAATCGTCTTCATCTCAATGTAGTCTGGCCGACAAAAACCAACCATCGACGTCAAAATCCACTTTTTCAGATGGATCAAGCTCCTCACATTTAGTGTCTCCAAAGGATATAGTACCAGTACCTAAAATGATAGCCAAAAAAAAGAGTTCAAGGGCTGGTTCTTCAGCGCTCGTGAGTGGATCACCGTTCAAAAATGCTCTTATAAGTTCTCTGAATAAGAAGAAACTAGAGCCTAAGTTGCTGAACTTCGAAGAACCAAAGAAAAAAAGGCAAGCAGTTtcacaaaaaaattgtaaaaaaaataagaaaaccccTAACAGCTCAACTAAAAACACTTGTGATAGCTCCTCGGACGAAGAAGAGCCAGACTAA
Protein Sequence
MKNKKSAGSDELSPSLLKEIVHIVAKPLSHLINCSFQQGQFPTKLKTAVVRPIPKRANDCKYDNFRPITIVSTISKIFEKAALTWLTDFLERKEILFKNQFGFVKGKTTTNAMFCMISDIVKALDRGDFTSGIFFDLSKAFDTVNHDLLLNKLNSIGVRGLTLEWFSSYLQDRCQYVEVSGVDSMGCSRPYASSLGNITCGVPQGSVLGPVLFLIYINDLSSCLGDGTVCLFADDTSLTVSGSTREDLELNTFVQSNNLLQWFDENLLKLNTGKTHFLNFSIRNNEETQFKLLLGDVELEATHQTKFLGLTLDDNVCFHAHIDIVCSRMSQRKTWDRVKMKEAVTAVKNKEMGLLKASKIYDVPRSTLKDYEKKPVEDIQELIDVPLGRKPILSKELEDELVDYCLQMESSYYGLTSRDLRRMAFQLAMRNNIPHPFSAEKESAGRKWQRLFFKRHPALVFRKPQPLSLARIQGFTKENVDNFFSILKPELEKVKSSAARVFNVDETGVTTVQHKSLKIITVKGKREVHKLSSAERGRLVTMVTCMSASGIFVPPLLVFPRKRMKKELLDGAPPGTINDCHISGWIQTDIFTGWFGHFVNFVKASKDDPVVLVFDGHTTHTKNIDVIDIARENGVSLVCLPPHSSNRMQPLDKTFMKPFKTFYAQEIENWLTSHPFRAVTMYQIGQLIGNAYIRAATMDIAIKGFQCTGILPYNPQVFSEVDFLSHRSEVAEEEARENAVESSSSQCSLADKNQPSTSKSTFSDGSSSSHLVSPKDIVPVPKMIAKKKSSRAGSSALVSGSPFKNALISSLNKKKLEPKLLNFEEPKKKRQAVSQKNCKKNKKTPNSSTKNTCDSSSDEEEPD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-