Sbis117905.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010003209.1:49877-51807[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.1e-09 1.1e-06 31.2 0.0 1 39 14 51 14 56 0.95
Sequence Information
- Coding Sequence
- ATGGAGCCGAATGAAGTTAAGAAAAAGCGAGCTGAATGGACTGAAGAGCAAATGGAGCAGGCCTTGAGTGCTGTTGGCAACGGAATGTCTGTCAACCAGGCTTCAAAGGAATTTCGGATAATTAGGAGGACCTTACGAAACCATTTGAAAACAGCCAGAGCATGTAAACTTAACAAAGTGATTGTCACTGATTACTTTGACAAATTGAAGGTAGTCGTGGAGGAATTGGATGTTGTCGGAAAGCCTCAGAATATTTACAACATCGATGAAAAGGGATGCCGTTTGACACTGCACCACCAACAGGAAGTTTTTGCCAAAAAAGGGACAAAGAGAGTGCATATAGTAGCACCTGAGCACTCTGAAAACGTGACAATCGTGTCGTGTGCCAATGCTAGTGGTCAGTACATACCACCAATGATATTATTTAAGGGTCAGAGGCTCAAACCAGAATGGGAAGAACATCTTCCTCCTGGAACTAAGGTAGTTATGACACCCAAAGTAAGTATGACACATGATGTTTTTGTGAAGTGGATCGAACATTTTCAACAGTTTCGAGTTGGAGGTAAAAATACTTTGTTGATTTTTGATGGTGTTAAGTCTCATTTAGATGCAAACATCGTTAAAGCTGCTGAAAAGTACGACATTACTCTGTTTTGTCTACCAAGCAATACAACCCATGAGCTACAGCCTATGGATAAGTCTGTTTTCAAATCTTTCGAATCGTTTTGGGATGATGAGGTTCTTCGATTTTGGATGAATAATCCTGAACGCTCAATAAGACGCACAGTCTTTGGTCGAATATTTTCTGAAGTTTGGGCTAAGGCCATGACACCAGGAAATATTATCTCCGGATTCAAAGCTACGGGAATTTACCATTTCAATCCATCAGTGATTCCAGAGAGTGCTTATGCACCTTCATGCCTAACCGAGCTTGCAAATCCCaatgatgaaaatgaaaatgagCAAGGCTCAAACACTTCCACAAATCAGAAGAAAAGTGCAGAAAGTGAACAAAGTACTTCTGCAGAACCGATGAATCAATCTTCAGCTAATAGGATCAAAACTTTACTTCCTAAACGTTCTTCCAAATACCAAGATGTTAGCTCTGAAAGTGATGATTCTTCAAATTACTCGATTCATGACACATCAGACAATGAAGATGTGGGACCTGTACCAACTGTTACCTTTAAAGACACCACATCTAAGCTAAACACGTCCTTCACAGAAATGTTGTCCACtcccaagattaaaactaaaaggattcaaagaaaaaaatccaTTAATTCACGAGCCCAAAAGCTAGTGGTTAACTTGTTTGATGCTCCTTCCGATAAAGGCGATGCTGCACCGAaaactattaaaaagaaaaacgaaCAGCCCAAACGCCTccaaatgaaaatgaaaaaagaatCTTCAAGGAGTGAAATTTTTGATCCGTCACTACCGTCTACAAGTGGTACAATTAAGAAGCCATCAACAAAGTCTTCACAGCGAGGCCTGTCCCATAAGGAATCATGGTACTGCTTCGTTTGTGACGAGGACCAGATCAGATATATGAGGATGTGCTCAGCCTGTGGACGGTATGTGCACGAAGAATGCGTAGGACTTACACAATTCGACAAAGACGCATTTATCTGCCCAAAATgtacttttagaaaaatattcactTCGTAA
- Protein Sequence
- MEPNEVKKKRAEWTEEQMEQALSAVGNGMSVNQASKEFRIIRRTLRNHLKTARACKLNKVIVTDYFDKLKVVVEELDVVGKPQNIYNIDEKGCRLTLHHQQEVFAKKGTKRVHIVAPEHSENVTIVSCANASGQYIPPMILFKGQRLKPEWEEHLPPGTKVVMTPKVSMTHDVFVKWIEHFQQFRVGGKNTLLIFDGVKSHLDANIVKAAEKYDITLFCLPSNTTHELQPMDKSVFKSFESFWDDEVLRFWMNNPERSIRRTVFGRIFSEVWAKAMTPGNIISGFKATGIYHFNPSVIPESAYAPSCLTELANPNDENENEQGSNTSTNQKKSAESEQSTSAEPMNQSSANRIKTLLPKRSSKYQDVSSESDDSSNYSIHDTSDNEDVGPVPTVTFKDTTSKLNTSFTEMLSTPKIKTKRIQRKKSINSRAQKLVVNLFDAPSDKGDAAPKTIKKKNEQPKRLQMKMKKESSRSEIFDPSLPSTSGTIKKPSTKSSQRGLSHKESWYCFVCDEDQIRYMRMCSACGRYVHEECVGLTQFDKDAFICPKCTFRKIFTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01372236; iTF_01372349;
- 90% Identity
- -
- 80% Identity
- -