Sbis074548.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000560.1:466013-467764[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.3e-11 1.2e-08 37.5 0.0 1 38 8 45 8 47 0.96
Sequence Information
- Coding Sequence
- ATGGCTCCTAGGAAGCAGTGGGACCCGGATAGAATGAAAAACGCTGTCAAAGCCGTTAGGAAAAAAGAAATGGGCTCTTTTAAAGCATCTAGGATTTTCAATGTACCCCAGACCACTTTGGAACGATACGTTAAAATTTCTGACAAAGAGGATGGTTCTGCATCACCAAACGCAATCGGAAGAAAACCAACGCTTTGTAAAAACATTGAGGAAGACCTCTCTAAGTACTGCATTCTTATGGAAGAAAAATTTTATGGGTTAACTACCAGAGATGTACGTTCTATGGCATTTAAATTAGCTACGTTGAACGGTATAAACCACAAATTTTCCAAAAAATCCGAACTTGCTGGGAGAAAATGGCTGAAAgggttttttaaaagaaatccACAACTTTCAGTAAGAACACCTCAAGGCCTATCTTTTGCTAGAGCTAAGGGGTTTAACCCGGAAGATGTATCTAGGTTTTTTGACTTATATGACCCTTGTCTCCAGAAAATCCAATCCAATCCGTCACGTTTGTTTAACTGTGATGAGACCGGGATAACTATTGTCCAACATAAGCACAGTAAAGTGGTTGCACTAAAAGGAAAACGGAAGATTGCATCCTTACAGGCTGCAGAACGCGGAGCATTGATAACAATAGTTACATGCACAAGCGCAACAGGGCAATACGTCCCTCCTTTGATTATTTTCCCCAGGAAAAACATGAAACTGGAACTTATGAATGGCACACCTCCTGGCTCTGTTTATGATTGCCACCCGTCTGGATGGATACAAAGTGATATTTTCACGAAATGGTTTCAACACTTCATAGATCACGTTAAGCCAACAAAAGAAGACCCTGTCCTTTTGGTTTTCGATGGTCATTTTACCCATACAAGAAATATTGATGTAAGCAATATTGCTCGAGAAAATCATGTTATCATTGTGTGTTTGCCTCCGCACAGTTCTCACAGGATGCAACCTCTTGATGTTAGCTTCATGAAACCCTTTAAAACATTCTACTCTCAAGAAATAGAAATGTGGTTGAGGGCAAACCCTGGAAGAGTTGTGACTGTGTATCAAATCGGAGACTTATTTGGAAAAGCATATATGAAAGCAGCCCCTGTTCAGAATGCTGTTGAGGGTTTTCAAACAACTGGCCTTTTTCCAATGAATAAATACAGATTTGGACTCGCAGACTTTCCTTTGCATCCACTACCAGCTACAACCTCCTCTTCTGTCGAAGTAACCAGCCCCACACCGCTTGTAAAGGCCTCTAATATTTCTCCAATTCCGAATTTGAGTGAACTTCAGAGGAAAAAAAGTGTTCGGGCCGGTTCAGCTCAAATAATAACAAGCAGCCCGTATAAAAAACTACTAGAGACTGatatagaaaagaaaattaaaaaaactaaaaaaggagACAAAAAGAAAGAACTCAAAAGATTTAAACAAGAAGTGAAGAAAACTAAGCTAACTAAGAAAGTAACGGCAGCTAGAAAGTTGATTTTAAGCTCATCTGAGGAAGAAGATGGCGATTTCCTTTACGCAGACGACTCATGTGAAGACGACTTGATTTCAGATGAAGACAACGATGCTGAGTGCATCTACTGTACCGGAAGATACTCAGACGACCACAATGGCGAGGACTGGGTGCGCTGCGAATCATGTATGTTATGGTCCCACACATCATGTGCCGATCTGGGAGCTTCAGCttttgtttgtgatttttgtGCGAAGAAAAAGGGCAAACATTTCAAGAAAAAGTAG
- Protein Sequence
- MAPRKQWDPDRMKNAVKAVRKKEMGSFKASRIFNVPQTTLERYVKISDKEDGSASPNAIGRKPTLCKNIEEDLSKYCILMEEKFYGLTTRDVRSMAFKLATLNGINHKFSKKSELAGRKWLKGFFKRNPQLSVRTPQGLSFARAKGFNPEDVSRFFDLYDPCLQKIQSNPSRLFNCDETGITIVQHKHSKVVALKGKRKIASLQAAERGALITIVTCTSATGQYVPPLIIFPRKNMKLELMNGTPPGSVYDCHPSGWIQSDIFTKWFQHFIDHVKPTKEDPVLLVFDGHFTHTRNIDVSNIARENHVIIVCLPPHSSHRMQPLDVSFMKPFKTFYSQEIEMWLRANPGRVVTVYQIGDLFGKAYMKAAPVQNAVEGFQTTGLFPMNKYRFGLADFPLHPLPATTSSSVEVTSPTPLVKASNISPIPNLSELQRKKSVRAGSAQIITSSPYKKLLETDIEKKIKKTKKGDKKKELKRFKQEVKKTKLTKKVTAARKLILSSSEEEDGDFLYADDSCEDDLISDEDNDAECIYCTGRYSDDHNGEDWVRCESCMLWSHTSCADLGASAFVCDFCAKKKGKHFKKK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01372290; iTF_01372291;
- 90% Identity
- iTF_01372290;
- 80% Identity
- -