Sbis058405.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010000310.1:223355-224104[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-10 4.5e-08 35.6 0.0 3 35 23 56 21 62 0.92
Sequence Information
- Coding Sequence
- ATGAATCATCAAGAGGAGGAAGAAGAAGTAGTGAAGAGAAGTTATTGTAGATTCAAATACAAAGTAGAAGACTTGAAAAAAGCTATAGAAGAAGTGAAGGCAGGAAAAACGTCCATCAACAAAGCTTCTCAGGTATACAGCATTCCCAAAGGTACCTTAGTTAATAAACTTAACTCTGATGATCCTCTTTTAAGAAAAATGGGACCACCAAGTGTTCTTTCACAAGAAGAGGAAAAACGACTGAAAGATTGGATTCTTGGTAAAGCCAAACTTGGTTTTCCAATGCATGAAGAAGATTTGAAGGACGCAGTACAAAAAGTACTGAATGATTCTGAAAGAACAACTGTTTTTATCAACAACAGACCTGGGAAAAAATGGGTCAAGCTTTTTCTAAAAAGACATCCTGAAATAAGCAAGAGAAACACAGAGTTAATATCAAAGGCTAGAGCTGCAGTAACAGAGGGAAAACTTAGAGAATGGTTTGACAAGCTTACGTGTTACTTGCATGAAGAAAACGCCGAAGACGTCCTTAATGATCCTAAAAGAGTTTACAATTTAGATGAGACTGGTGTATCAGTTTGTCCAAAGTCAGGTAAGCTTCTTGGCccaaaaaaatatagaaacttcTATGAAGTAGCCGCTGGCCCCGAAAAAGAATGTATCACAGTACTTTGTACGTTCTCAGCTGCCGGTGATTCAATCGATCCAATGATTGTATATGCGTACAAACGTATCCCAAGATGTTGCTGA
- Protein Sequence
- MNHQEEEEEVVKRSYCRFKYKVEDLKKAIEEVKAGKTSINKASQVYSIPKGTLVNKLNSDDPLLRKMGPPSVLSQEEEKRLKDWILGKAKLGFPMHEEDLKDAVQKVLNDSERTTVFINNRPGKKWVKLFLKRHPEISKRNTELISKARAAVTEGKLREWFDKLTCYLHEENAEDVLNDPKRVYNLDETGVSVCPKSGKLLGPKKYRNFYEVAAGPEKECITVLCTFSAAGDSIDPMIVYAYKRIPRCC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01372292; iTF_01372280;
- 90% Identity
- iTF_01372292;
- 80% Identity
- -