Sbis112111.1
Basic Information
- Insect
- Stictocephala bisonia
- Gene Symbol
- -
- Assembly
- GCA_035578905.1
- Location
- JAQJVL010002504.1:45587-48786[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 3.8e-08 1.4e-05 27.7 0.0 3 42 20 59 18 62 0.91 2 3 0.0014 0.51 13.0 0.1 18 44 555 581 549 582 0.95 3 3 6.4 2.3e+03 1.3 0.0 16 26 709 719 707 719 0.91
Sequence Information
- Coding Sequence
- ATGCCGTCCAAATACAAAAGACTTCCTGGATGTCGTACGTACAAAGACTTCTCTTGTGAACAATTGGAGGAATGCGTGAACGCAATTAGATCTGGTGAAATGTCACAAAGGGATGCAGAAGTTCATTTCAAAATTAGTAGATCAACTATAAAACGTAGACTAAAAAGTGGAACAGCAAAAAGTGCTGGTCATCCTAAAGTTTTCACCGAGGAAGAGGAGAGAGCATTTGCGAGTCATCTGGATAAAATTTGTGAATTTGGATTTCCTGTTGATGAACTGGACTTCAGATTTattgtaaaatcatatttagaacTGCATGCAAGCAACATAAAAAGAGTTCGAGCCTCTATTGATCAAGACATCCTCAACGAATATATGGACAATTTGAGTCAGTCAATTGAAGGTATTTGTCACAGAGGCTGCAAATATCCAGAACGGGTTATCAACTCTACAAAAAGTAATATTTCAGTCATGTTTTGCGGTAATGCAGCTGGGGCATCAATTCCTCCTTATATAATCTATAAGGCCGAACATCTTTGGACAACCTGGACAGAAAATGGACCACGAGGTGCCAGATACAATCGTAGTAAAAATGGCTGGATTGATTTAGGCATATTCGAAGATTGGTTTACAAGTCATTTGTTCCCCATTCTGAAAAAACAAGATGGTAAGAAGCTTGTAATTGGTGACAACTTGACTTCTCATCTGAGTGTGAATGTTCTTAAACTGTGCCAAGACaatgatataaaatttgtttgtttgccTCCAAATTCCACGCACCTGACACAACCTTTGGATATCGCCTATTTCCGACCACTGAAGACAAAGTGGAGGGAAATTCTTTCCAAGTGGAAGGAATCGGATGCTGGTAAGAAAGTGCCAGCACTTCCTAAAGATCAATTCCCCCTACTGCTGAAAACAGCATTGCAAGAGCTGGAACCAACAATGGTCAGCAATCTGCAAGCAGGGTTCAAAAAAGCTGGGATTTTCCCACTCAACCGGCAGGAAATTCTGGATCGTCTACCAAAAGGAGAATCCAATTTGAACCTCGATTTAGTATCAGACGCTTTTATTTCTCGCCTTGAACGCAAACGTCAGGATTTTGTTAAAACTCGTCCCACCAAAAAGAGGAAACTGCAAGTCCCAGCTGGGAAAAGCATTAGTGCTACTGATGTCAGTGATTCAATTGAGGATAAAACATCCAATCAATCCAATAAAGGGAAAGGACCAGTAAAGAAATCTGATAATAAGAAGCTCAAATCAAACCACAAGAAAAAGCAAACAGAAAGTGTATGGGAATCATCATCTGAAGATGCAGATAATTTTAGCCTCCATTCATCAGGAGAAAGTGATTTCAGTTTTTTGAACAGTGAATTTGATCCTTCAGAGCTTGTGGATTTGCCGACAACTAGTGGCACCAGTGAAGTTACAGCGAAGAATAAACTCTGCAATCAAGAATCGAAGTCTGCGACAACAGTTCAGCGTAATTTTCTTACCAAGTACGCTAAAGATCCTCCTAGTAGGCCTTCAATTTATGAGTGGCATAGTTGTTTTGTAGAAACAGGGTGCtcagtgaaacataaaaaatcctcAGGTCGTCCAAGCACATCTGACGAAGTCGTTGAGCAAGTGagacaatgttttgtaaatagcccTACGAAATCGACCCGACGTGCATCTCGTGAGCTGCTAGTACCACATACGACGGTTTGGCGTGTGTTAAGAAAACGTTTGCACTTGAAACCATACCGATATTCGCTTTTACAAGCAATTAAAGACACTAATAAGATTGCCCGTAGGAACTTCTGTGTGGATATGTTAAATCGAGTGGATGATGATGAACATTTCTTGGACAACATAATCTTTAGTGACGAGTCCACTTTTCACTTAAGTGGCAAGGTAAACACACATAACTGTAGAATTTGGGGCAGCGACAATCCACATGAAACATTACAACATGTTCGTGATAGCCCTAAAGTGAACGTTTTTTGTGCGTTGAGCAAGAGGAAAGTGTACAGCATGGCCCCCACAAGGGTGGGGCTGGAGCAACTCTGGTTACCATTTGTGAAGGATCCTCAACAGATCTACAATCTAAGGATAATGTCTTCTCTTATGTTTGGTTGGAAAATGAGTATAAAAAAGGCTCAAACCAAATTTCTTCAGCGATTTACCATCGCTTGCTAA
- Protein Sequence
- MPSKYKRLPGCRTYKDFSCEQLEECVNAIRSGEMSQRDAEVHFKISRSTIKRRLKSGTAKSAGHPKVFTEEEERAFASHLDKICEFGFPVDELDFRFIVKSYLELHASNIKRVRASIDQDILNEYMDNLSQSIEGICHRGCKYPERVINSTKSNISVMFCGNAAGASIPPYIIYKAEHLWTTWTENGPRGARYNRSKNGWIDLGIFEDWFTSHLFPILKKQDGKKLVIGDNLTSHLSVNVLKLCQDNDIKFVCLPPNSTHLTQPLDIAYFRPLKTKWREILSKWKESDAGKKVPALPKDQFPLLLKTALQELEPTMVSNLQAGFKKAGIFPLNRQEILDRLPKGESNLNLDLVSDAFISRLERKRQDFVKTRPTKKRKLQVPAGKSISATDVSDSIEDKTSNQSNKGKGPVKKSDNKKLKSNHKKKQTESVWESSSEDADNFSLHSSGESDFSFLNSEFDPSELVDLPTTSGTSEVTAKNKLCNQESKSATTVQRNFLTKYAKDPPSRPSIYEWHSCFVETGCSVKHKKSSGRPSTSDEVVEQVRQCFVNSPTKSTRRASRELLVPHTTVWRVLRKRLHLKPYRYSLLQAIKDTNKIARRNFCVDMLNRVDDDEHFLDNIIFSDESTFHLSGKVNTHNCRIWGSDNPHETLQHVRDSPKVNVFCALSKRKVYSMAPTRVGLEQLWLPFVKDPQQIYNLRIMSSLMFGWKMSIKKAQTKFLQRFTIAC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -