Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 0.00076 0.28 13.9 0.1 1 37 94 129 94 135 0.92

2 4 8.8e-10 3.2e-07 32.9 0.0 1 39 144 181 144 185 0.94

3 4 0.15 53 6.6 0.0 19 39 216 236 204 241 0.79

4 4 0.0074 2.7 10.7 0.7 5 26 263 284 262 285 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	0.00076	0.28	13.9	0.1	1	37	94	129	94	135	0.92
2	4	8.8e-10	3.2e-07	32.9	0.0	1	39	144	181	144	185	0.94
3	4	0.15	53	6.6	0.0	19	39	216	236	204	241	0.79
4	4	0.0074	2.7	10.7	0.7	5	26	263	284	262	285	0.93

Coding Sequence: ATGGATATAAAGGAAGAACCTCAGTTTTATACAGAGGAAGAAGCTGCTGTTCTAGGAAGTAATATGGAAATAGTATCGTCCAACATTGAATATGAAGTCGATTCATCCAATGTGGAACAAGTTCTGGAATACACCAACATTGAAGAGGATTTTAAAGAGTCTAATTTCACAATCATTCCAGATGAAAATGAAGACCAGTCAAACTTGTCCATAGAAACAAGTACTGTGGTTcctgaaaacagaaaaaaacgtAGACGTGAGTTCTCTAAAAAGGATTACAGTGAAGATGCTGTAGCTGCTGCTATTGATGATCTTGTGCAAGGCCACAGTCTGCTGGAAACAGCTAATACACATCGTATTCCAAGGTCAACATTGTATGCAAGAGCACGTAGTTATGGCATTTCCCCAAGAATAACTCGTCATGAGTATTCAGAAGAAAAAATTACTGCTGCCGTACAAACAGTCCAAGCGGGTGCCAGCCTCCAGACAGCTTCTGTTATGTACAACATTCCCAAGACTGTACTGTGGAGGCGAGTACAAAAGGACATTGGCTCTTACGCCCTCAGTATACGAGCCAAGCTTAAACAGCGTTATTTGCCTCATGCAAAGGAAGCAGCTATACGAGCTCTAGAGAAAggtgaaaaaattaacaaagtgGCAATGCAATATAAgatCCCTAAAACAACATTGTTTAGAGAAAAGAGCCGTCTCGTAGAAGCCGGCAAGTTACCAAAGTCATGTCTAAACAGAAGAGTGCCAAACAACGACAGTTACAAACAGATTCGTCTGACCCAGGCAGTGGCTGCATGTAAGGAGGGCCGAATGTCCCAATCTGCTGCATCTTCTGCATTTAAAAGGAGTGGCAGCAGAAGGACGGTCTTCTACAGTAGGCGGCAGCACGCTAGAGACCTGGGCTGCGACTGCACAACCGACAAGACCCCCACGCTCCCTGATGTCACTCGTCACCGGTCAGCTGCAATATTGTTGCGTGGCTATGCCACATCTTTCTCTTCATTTTGCTCAAAGCGTAACTTTCAAAAATCAGTTCTTCATTTCAAATTAACAAATCGGgtctaa
Protein Sequence: MDIKEEPQFYTEEEAAVLGSNMEIVSSNIEYEVDSSNVEQVLEYTNIEEDFKESNFTIIPDENEDQSNLSIETSTVVPENRKKRRREFSKKDYSEDAVAAAIDDLVQGHSLLETANTHRIPRSTLYARARSYGISPRITRHEYSEEKITAAVQTVQAGASLQTASVMYNIPKTVLWRRVQKDIGSYALSIRAKLKQRYLPHAKEAAIRALEKGEKINKVAMQYKIPKTTLFREKSRLVEAGKLPKSCLNRRVPNNDSYKQIRLTQAVAACKEGRMSQSAASSAFKRSGSRRTVFYSRRQHARDLGCDCTTDKTPTLPDVTRHRSAAILLRGYATSFSSFCSKRNFQKSVLHFKLTNRV

Sequence clustering based on sequence similarity using MMseqs2