Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 2.9 1.1e+03 2.4 0.0 32 44 48 60 45 61 0.90

2 18 1.8 6.6e+02 3.1 0.0 31 44 64 77 58 78 0.84

3 18 2 7.2e+02 3.0 0.0 31 44 81 94 75 95 0.84

4 18 2.3 8.5e+02 2.7 0.0 32 44 99 111 93 112 0.87

5 18 1.8 6.6e+02 3.1 0.0 31 44 115 128 109 129 0.84

6 18 1.8 6.6e+02 3.1 0.0 31 44 132 145 126 146 0.84

7 18 1.8 6.6e+02 3.1 0.0 31 44 149 162 143 163 0.84

8 18 2.2 7.9e+02 2.8 0.0 31 44 166 179 161 180 0.86

9 18 1.8 6.6e+02 3.1 0.0 31 44 183 196 177 197 0.84

10 18 1.8 6.6e+02 3.1 0.0 31 44 200 213 194 214 0.84

11 18 1.8 6.6e+02 3.1 0.0 31 44 217 230 211 231 0.84

12 18 1.8 6.6e+02 3.1 0.0 31 44 234 247 228 248 0.84

13 18 1.8 6.6e+02 3.1 0.0 31 44 251 264 245 265 0.84

14 18 1.8 6.6e+02 3.1 0.0 31 44 268 281 262 282 0.84

15 18 1.8 6.6e+02 3.1 0.0 31 44 285 298 279 299 0.84

16 18 2.2 7.9e+02 2.8 0.0 31 44 302 315 297 316 0.86

17 18 1.8 6.6e+02 3.1 0.0 31 44 319 332 313 333 0.84

18 18 1.8 6.6e+02 3.1 0.0 31 44 336 349 330 350 0.84

#	of	c-Evalue	i-Evalue	score	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	2.9	1.1e+03	2.4	32	44	48	60	45	61	0.90
2	18	1.8	6.6e+02	3.1	31	44	64	77	58	78	0.84
3	18	2	7.2e+02	3.0	31	44	81	94	75	95	0.84
4	18	2.3	8.5e+02	2.7	32	44	99	111	93	112	0.87
5	18	1.8	6.6e+02	3.1	31	44	115	128	109	129	0.84
6	18	1.8	6.6e+02	3.1	31	44	132	145	126	146	0.84
7	18	1.8	6.6e+02	3.1	31	44	149	162	143	163	0.84
8	18	2.2	7.9e+02	2.8	31	44	166	179	161	180	0.86
9	18	1.8	6.6e+02	3.1	31	44	183	196	177	197	0.84
10	18	1.8	6.6e+02	3.1	31	44	200	213	194	214	0.84
11	18	1.8	6.6e+02	3.1	31	44	217	230	211	231	0.84
12	18	1.8	6.6e+02	3.1	31	44	234	247	228	248	0.84
13	18	1.8	6.6e+02	3.1	31	44	251	264	245	265	0.84
14	18	1.8	6.6e+02	3.1	31	44	268	281	262	282	0.84
15	18	1.8	6.6e+02	3.1	31	44	285	298	279	299	0.84
16	18	2.2	7.9e+02	2.8	31	44	302	315	297	316	0.86
17	18	1.8	6.6e+02	3.1	31	44	319	332	313	333	0.84
18	18	1.8	6.6e+02	3.1	31	44	336	349	330	350	0.84

Coding Sequence: ATGTGTATACAAGTTTGTGATGAAGGATCGGTCCGTGCTTCAGTTTGGGATCTGTTCCACTACCACACAACAACAACAGCGTGTGAAGGGCAACACCCGGTCCTACTCCGTGTTCTGACACAACTACAACTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCTGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCTGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGGAACGTAGTTCGGGAACACCCTGCATACAAGCTAAACCCGGCTACGTTTTGCTGCGGCTTTGTCTGA
Protein Sequence: MCIQVCDEGSVRASVWDLFHYHTTTTACEGQHPVLLRVLTQLQLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNLATFWNVVREHPAYKLNLATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFWNVVREHPAYKLNPATFCCGFV

Sequence clustering based on sequence similarity using MMseqs2