Basic Information

Transcription Factor Domain

TF Family: ARID
Domain: ARID domain
PFAM: PF01388
TF Group: Helix-turn-helix
Description: This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 0.0019 42 7.6 0.1 38 61 7 30 6 39 0.84

2 5 0.01 2.2e+02 5.3 0.1 40 61 36 57 25 69 0.57

3 5 0.0012 25 8.3 0.1 37 65 69 97 61 110 0.85

4 5 0.014 3e+02 4.9 0.1 43 65 111 133 105 152 0.59

5 5 0.0014 31 8.0 0.1 37 65 150 178 149 180 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	0.0019	42	7.6	0.1	38	61	7	30	6	39	0.84
2	5	0.01	2.2e+02	5.3	0.1	40	61	36	57	25	69	0.57
3	5	0.0012	25	8.3	0.1	37	65	69	97	61	110	0.85
4	5	0.014	3e+02	4.9	0.1	43	65	111	133	105	152	0.59
5	5	0.0014	31	8.0	0.1	37	65	150	178	149	180	0.92

Coding Sequence: ATGAGAAGAGGTAGGTGTCAAGAAGTAATGAGGAGAGGTGGACTTCAAGAAGTAATGAGGAGAGGTAGACTTCAAGAGGTAATGAGGAGAGGTAGACTTCAAGAGGTAATGAGAAGAGGTAGGTTTCAAGAGGTAATGAGGAGAGGTAGGTTTCAAGAGGTAATGAGGAGAGGCAGGCTTCAAGAGGTAATGAGTAGAGGTAGGTTTCAAGAAGTAATGAGGAGAGGTAGGTTTCAAGAGGTAACGAGGAGAGATAGGTTTCAAGAAGTAATGAGGAGAGGTAGGTTTCAAGAAGTAATGAGGAGGGGTAGGTTTCAAGAGGACATGAGAAGAGGTGGGCTTCAAGAGGTAATGAGAAGAGGTAGACTTCAAGAGGTAATGAGGAGAGGTAGGTTTCAAGAGGTAATGAGGAGAGGTAGGCTTCAAGAGGTAATGAGAATAGGTAGGTTTCAAGAGGTAATGAGAAGAGGTAGGTTTCAAGAAGTAATGAGGAGAGGTAGGTTTCAAGAAGTAATGAGGAGGGTAGGTTTAAAGAGGAAATGA
Protein Sequence: MRRGRCQEVMRRGGLQEVMRRGRLQEVMRRGRLQEVMRRGRFQEVMRRGRFQEVMRRGRLQEVMSRGRFQEVMRRGRFQEVTRRDRFQEVMRRGRFQEVMRRGRFQEDMRRGGLQEVMRRGRLQEVMRRGRFQEVMRRGRLQEVMRIGRFQEVMRRGRFQEVMRRGRFQEVMRRVGLKRK

Sequence clustering based on sequence similarity using MMseqs2