Sbim015858.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020181.1:52274972-52283394[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 16 1.4 2.1e+02 4.0 0.0 2 23 282 304 281 304 0.88 2 16 0.00015 0.023 16.5 0.2 1 23 358 381 358 381 0.97 3 16 7.7 1.2e+03 1.7 0.0 3 20 389 406 387 408 0.91 4 16 0.062 9.3 8.2 0.3 1 23 419 441 419 441 0.97 5 16 0.0012 0.18 13.6 0.8 1 23 473 496 473 496 0.97 6 16 0.00056 0.084 14.7 4.6 1 23 499 522 499 522 0.96 7 16 0.055 8.2 8.4 3.4 2 23 529 551 528 551 0.95 8 16 0.016 2.3 10.1 5.4 1 21 615 635 615 636 0.95 9 16 0.0018 0.27 13.1 1.4 2 23 648 670 647 670 0.92 10 16 0.15 23 7.0 0.9 1 23 673 696 673 696 0.95 11 16 3 4.6e+02 2.9 0.1 1 23 727 750 727 750 0.93 12 16 2.3 3.5e+02 3.3 1.9 2 23 757 779 756 780 0.94 13 16 0.05 7.4 8.6 0.8 2 23 788 810 787 810 0.95 14 16 6.7 1e+03 1.8 3.1 3 23 944 965 943 965 0.94 15 16 1.8 2.8e+02 3.6 0.2 2 23 972 994 971 994 0.86 16 16 0.23 35 6.4 0.8 1 23 1007 1029 1007 1029 0.96
Sequence Information
- Coding Sequence
- ATGGAAAATAAACTTTGTAGGACGTGCGGAAAATTTACAGAGcaatttgtaaacatttttcGCACTGAAGGGCTCAAAGACAAACTAGAAACCTGCTTGCCAATAATCGTATCCCCACATTGCTTGTTACCAGATACTATTTGCACTGACTgctacgaaaatgtaaaaagttactatagttttataaaaaactgtttgcAAAGCATAATAATATTAGAAGCACAATTAGATGTAAACGAATCGTGTTTAAAATCAAAGCGAAAGCATGAAAAATCGTCTTGTACTGACTTCTATAATCCACCAGTATTATCTACGAAAACTAGCCAGCATGAAGAGGAATATAACATAGCCTTTTGCACACAAAAAATCAATGCATTTTCAAAGCAAATCGCCGAGgcggaaaaaatattaaacgacCCCTTCGAAATAAGCACAATCATTCCAAAACCTGCAATAAACCCTAAACTTGTACAGTATGATAGTAGTTCGGATGATAATCACTCCGATCGTGATGATCGTGAAGAGATGGCAACAAATATTAACAACAAATTATACTTCGATGATAAAGAAAATGATTTAATCAATGAAATCGCTGAGAGGAAGTCACAGAAAAGAAAgagtcaagaaattttaaatagcagcaccaaaatttttaaattggacACGAATAGGAGGAAACGGAGACAGCCGGTTAAAGTTGAAACAGTTACCAACGATGCTGGgtggaattttaatattttggaacaaaTTTATGAAGGAATGCATGAAAATAATTTCGAACAAAACGTCCTGGTTAAACAAGAGCTCATTGAACAAcaaaatccCATAGAAGTATTGCCACAAGTGTGTTTGCTATGTGATTCACAATTTTCTGGACCTCCGCAGTTGGCGACTCATGTTTTTGAAGTCCATGGTATTGATATGGCACAAATTGCGTCTGCAGAGCCTGTGATGgaaaagaagaagaagattCCAAATCTAGTGAAAATAACAGATCTCAAACAAAAGCGAGAATCTCTAGAAGCAAAATCCATAGAAAATGGGGAGGAACCACCGACATTGGAGCCTACATTCGTATGCCCCTTGTGCCCAGCATCACTCACGAATAAAAGCGATCTCTTTCTACACTTAAGACAGAAACATCCAAATAGATCAGATTTAATATGTGGCTTGTGCTTGTACATGGCCACTTCCTATGCGAATTTAACCGACCACTTAGTGAACTGCGTTCAAACTCATCCCATCAACCAACCATTTATATGCAAGATATGCAAATATAATGAAGATAACCaacgaaatttagaaaaccacgtTTTGGTGCACGAGTTTGTAGCGAACTTCTGTAAGAAAAAAGGTGCCATATTTGATCCTGGTGATTACGTAGAATTAAATCCAAATTGTGAATCAACTAAAACATACCCCTGCAATGAATGCGGAACCAGTTTCGTGATTTTCAAAGAATTCTCCTCCCATAGACGATCTCAACACTCGATATTCCATTGTGAtctttgcaataaattttatggCAGAAATTCCCATTTATGGAAGCACGTTAATCGATTACACAAGGGACACCCATCGATAACATGCCAATTCTGCTACAAAACCAGTGCATCAAAATACCACTTAagtcaacattttaataaaatacacacAATTAAAACAGGCACTAAACTTAAAAATGGGGATGGAGATGATGAAGAATTGTTACCTAAAAAAATCCAACggcaagaaataattaaaaaagaagataTATCTCAAGTTCCTAAAGAAATTGATCGATCAAGCGATCTTTACACTAACATCATTACCAATTACACCCCACCTGTTAATAAAGGCGAATTTAAATGCCAAAAGTGTTCTAAAGGCTTCCATAAAAAGACACTTTTGAAGAAACATAAGAAAAATTGCAGACCAAGATTACAAAAAGATTTATTAACTCGTTGTAAAACATGCTCTCGGATTTTTAAGGACAGGCAAAGCTTGGCAAAACATCTTGTTAACTATCACAGTGAATACGTCTGTGAAATTTGCAATGAAAAAGTACAAAGTAAGTGTGAAATTGTTTCTCACATTCGTTTCAGCCATCCATCATGCCATTTATTCTGCAAAGAATGCGCCAATGTTCTCAGGTGCCAGGAGGACCTTGAAATACATTCTAAAGATCATTCCAACTCATTTGTTTGTCAATTCTGCGGTGATTTACTTCCAAGCAGGATAAAACTCAAAATGCACATTCTCAGTTTACAtcgtaaaattcttaatttaagtTGTGGGGTGTGTTTAAAGCTATTTGAAACACAACACATTTTAAGGGATCACGTACGCTTAACACACCATGATGTACTTTTACCCTTAACGACTTGCACAGTATGTGGCAAAAACTACGGTTCTAAATGGAAAACTTACGATCACATTAATAAATCGCATGGTAGAATCTTCAAAGCATGCAAGGCTTGTCTTGAAGTTTTCGATACCGATTTAGATTTAGAAAGTCATTATTATGAAATACATGGGAATACTCCTAAAGAAAAACCCATTAAAAAAGAGATTGTTACAAAAAAGGAACCTGTAATTTATGAAAGTGAACCTGAGCGTGATGAAAAGAATAGTTCTTCTGCAGTTGAAAGTTCTTCGGATCAGGAAGAAACAAAAATGTCTCTATTGGAAAAACGATTGACTACACCAGAAGAGCCTAAAGTTTTtaagaaagaaaataataagaagtTAGTATTGAAATCGGAGAACGATTCTAATTATGCTCCTGATCAAAATGGTTCCAATAGCTCTAAGAGAACGGTTTATGTTAATTCTAACGATCCATCTTTTTGTGAAATTTGCTTTAAAACTTGGCCTGCAAAGAAGCACCTTTGGCAACACTATATAAGATGTCATAAATTAGTAGCGGCTACGGTTTGTGggatttgtttaaaaactaatgATAATTATGAAATGCTGCAGAAGCATCTTATTGAAAATCATCCTACTTTACTTCACGGTAAAGGTTTTGGTTCTAATTTCATTTGTAGAATTTGCGGGAGGTACCATAATGCAAGCTCAAAGTTAAGACTCCACATGGCGATTCACGAAAATTTTGATTGGAGGCTTTTTGATAACATACCAATTAAACAAGAAACTTCACCAAATGAATCAATTAATTATGAGAATTTAATTGAACAGGTGGAATGCTCTTCGGATGACTCCAGTAGTTCTTCCGATAGTGATAATGATGAAAGTGATGAAACAAATGCAGAAAATAAAACGGAAGTTGCCAGTAAAACTGATGATGAATCATCGACAAGTCAAAGTGTGCATGTTAAAAGTGAGAATTGTAGTTCGGATGAGGAAGAAGAGGATGATGAGGATGACGATGATGATGATTTGTATGATGATAATGCATTGTCAAATAATTCTGATGCAGGAGCAAAGAGTATGAATTTATATAGGCATCCTGATGTTGTGAATTCTGCAGTTGAATCTATTTGTTACGAGGATGAGGAGTATGATGAGGATTTTAATAATCATTCCGAGTATATGGAGGTGCAAAATCATAATAATTTAAACCCACATGAGATTCAAAGTGCAGTTGATAGTATTTTGTGA
- Protein Sequence
- MENKLCRTCGKFTEQFVNIFRTEGLKDKLETCLPIIVSPHCLLPDTICTDCYENVKSYYSFIKNCLQSIIILEAQLDVNESCLKSKRKHEKSSCTDFYNPPVLSTKTSQHEEEYNIAFCTQKINAFSKQIAEAEKILNDPFEISTIIPKPAINPKLVQYDSSSDDNHSDRDDREEMATNINNKLYFDDKENDLINEIAERKSQKRKSQEILNSSTKIFKLDTNRRKRRQPVKVETVTNDAGWNFNILEQIYEGMHENNFEQNVLVKQELIEQQNPIEVLPQVCLLCDSQFSGPPQLATHVFEVHGIDMAQIASAEPVMEKKKKIPNLVKITDLKQKRESLEAKSIENGEEPPTLEPTFVCPLCPASLTNKSDLFLHLRQKHPNRSDLICGLCLYMATSYANLTDHLVNCVQTHPINQPFICKICKYNEDNQRNLENHVLVHEFVANFCKKKGAIFDPGDYVELNPNCESTKTYPCNECGTSFVIFKEFSSHRRSQHSIFHCDLCNKFYGRNSHLWKHVNRLHKGHPSITCQFCYKTSASKYHLSQHFNKIHTIKTGTKLKNGDGDDEELLPKKIQRQEIIKKEDISQVPKEIDRSSDLYTNIITNYTPPVNKGEFKCQKCSKGFHKKTLLKKHKKNCRPRLQKDLLTRCKTCSRIFKDRQSLAKHLVNYHSEYVCEICNEKVQSKCEIVSHIRFSHPSCHLFCKECANVLRCQEDLEIHSKDHSNSFVCQFCGDLLPSRIKLKMHILSLHRKILNLSCGVCLKLFETQHILRDHVRLTHHDVLLPLTTCTVCGKNYGSKWKTYDHINKSHGRIFKACKACLEVFDTDLDLESHYYEIHGNTPKEKPIKKEIVTKKEPVIYESEPERDEKNSSSAVESSSDQEETKMSLLEKRLTTPEEPKVFKKENNKKLVLKSENDSNYAPDQNGSNSSKRTVYVNSNDPSFCEICFKTWPAKKHLWQHYIRCHKLVAATVCGICLKTNDNYEMLQKHLIENHPTLLHGKGFGSNFICRICGRYHNASSKLRLHMAIHENFDWRLFDNIPIKQETSPNESINYENLIEQVECSSDDSSSSSDSDNDESDETNAENKTEVASKTDDESSTSQSVHVKSENCSSDEEEEDDEDDDDDDLYDDNALSNNSDAGAKSMNLYRHPDVVNSAVESICYEDEEYDEDFNNHSEYMEVQNHNNLNPHEIQSAVDSIL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -