Sbim002304.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:161490-188917[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 23 3.7 5.5e+02 2.7 0.3 1 22 246 267 246 267 0.92 2 23 0.0092 1.4 10.9 2.8 1 23 273 295 273 295 0.96 3 23 9.5 1.4e+03 1.4 0.6 1 20 469 488 469 490 0.91 4 23 1.8 2.7e+02 3.6 0.2 3 23 498 519 497 519 0.93 5 23 0.026 3.9 9.4 1.5 3 23 525 545 524 545 0.97 6 23 0.023 3.5 9.6 5.1 1 23 551 574 551 574 0.96 7 23 9e-06 0.0013 20.3 2.2 1 23 579 601 579 601 0.97 8 23 0.012 1.8 10.5 1.8 2 23 689 710 688 710 0.97 9 23 0.18 27 6.8 1.2 1 20 832 851 832 853 0.96 10 23 0.0047 0.71 11.8 0.7 2 23 860 882 860 882 0.96 11 23 0.00037 0.056 15.2 0.4 1 23 959 981 959 981 0.97 12 23 9.4e-05 0.014 17.1 0.5 2 23 1032 1053 1032 1053 0.97 13 23 0.086 13 7.8 0.1 2 23 1057 1079 1056 1079 0.92 14 23 0.13 20 7.2 3.0 1 21 1082 1102 1082 1105 0.89 15 23 0.14 20 7.2 0.2 2 22 1115 1135 1115 1138 0.88 16 23 0.014 2 10.3 1.0 1 23 1140 1162 1140 1162 0.98 17 23 0.0021 0.32 12.9 0.1 3 23 1201 1221 1200 1221 0.97 18 23 0.0046 0.69 11.8 1.4 1 23 1246 1268 1246 1268 0.98 19 23 0.00013 0.02 16.6 1.0 1 21 1686 1706 1686 1707 0.96 20 23 2.6 3.8e+02 3.2 10.2 1 23 1708 1731 1708 1732 0.97 21 23 0.08 12 7.9 0.3 2 23 1736 1758 1736 1758 0.93 22 23 0.69 1e+02 4.9 1.4 1 23 1777 1800 1777 1800 0.96 23 23 8.9 1.3e+03 1.5 0.5 2 23 1805 1827 1804 1827 0.88
Sequence Information
- Coding Sequence
- ATGGGTAGTATGGGCgaattaatgaaattatgtaGACTCTGTTTAGTTAAAGACAAAGTGAATGTTCCAATTTTCGAGGGAGCAGGTGATATTAGGAAAATATCGCAGAAGATTAGTGCTTGCCTGCCGGTTAAGgTTGCCAAAGATGATAAacttcctaaaaaaatttgcgGCAGCTGTTCTCACAAATTAGACATAGTATacttattttggaaaacaaCAACTGCTTCAGAAAAACAATTATTGGAATGGGTTAAAAATGCAGCTTCCATTCAAGAAGAAGACGAAGATCGTGCCATTGAAGCAGAGCATATTGTTCTAAAACAAGAGGTTGATAATGGCGACTCTGAGGCTTTGGATGCAGGAGAATTTATTGATGTTAATGAGACATTCGACTCTATTGGATATTCACGTCATGATGATGATGACGATATGAGTAACGAACATatCGCTGTTAAAACTGAAAATGATAACGAACCAcctcataaaaaacaaaaagcaGTTTCTTTGTCATCGGGTGAATCTGAAGAAGATGGAGATGACACTGCAGATGCTTATAATAGAGATGATAGTGATGATGAAGACAATGAAATGAATGAAGCACAACCCACATTTGTCAGTGTGAGTGACGCAGACCAACAACCAGGACCATCTGGTGTAGGAAAATCTTCAGGAGACGCACCATACGAAGAAATCATCATTGATTCGAATTATGATGAAACACTGACATCTAGCTACCAATGCGAAGTTTGCATGAGTTTATTTGTGGATAGATCAGAATTTTTGGAACACCATATGACGCGATTTGGTTCAACATTCACATGTTGTCGTTGCGAAGCTTCTTTCAAAAATAGTACTGCTTTAAGTCGCCATTACGAAGAACACAAAAGAGATAATAATCAGTTGACTGAGTCAGATATTTTACAGGAAACTGAAAACGAAAATGTAGAGCTTCATTATAACGAAAACGTTGAGGCTGTCATGAATATACCAGATGATGATGTTGTTTATTTACTCGATGAAGATGTAACGGAGTATGTTAATGAAGTGGTAATTGCCGATTCGACACAGAATAATTTACAgcaacaaaaaaatagaaaaaccgCTGATAGTTACCTTGTTCATACAGATCACGGTTATATTATGCCAAACGTGTTCAAGGGTCAATTGGAGTGTAAAAAGCGTCCGAAGAAACGCAATGTAACTCTTCACAACTTGGAAGAGGATGATGAAACAACTGAAGCTTCAAATTTACTTATTCGCATGGAGCCATCGACAAGTCAAATTCTATACTCTTCCCCGAAGACCAAAATATTTCAGCCCAAACGAAAACACGAACTACCAAATTTCTCCACTGCTGATTTCTTACTTGTGGGTCCCAATGAAGACATAGATATACCCCATTATAAGTGCTTGCGATGTGAGCAgttatttattaacaaacttGTTTTCTTTAGGCATGTAGATAAGGGAAAATGTTATGTAAATAGTTGTGATGTATGTATGGCgacttttgaaaaaaacagtGAATTTTATGAACATTACATAATTAACCATCCAGAACGTGCAATCTGCAATTTTTGCTTCAGAACATTCATGTACGAAAAGAATGTCAAAGAGCATATGTTAAGGCATCTTGATCAATTTAGACATAGGTGTGAAAAATGTAATAAAGGCTTTTATACAGTAAGAGAGTACAGAAACCATTATAAAAATAGGCATATGGGTATTCGCCATAATTGTGGTGAATGTGGACGATCATTTGCAGATCTTTACTATTTTAAGAGACACATGTCAACTCACGGTCCTAATCTGCTTAGGCAAAATGATTCgcaaaaaagaaatcttaaaaagtgTGTAGATTTGCTAGGGGATCTTGATAATTTggatataacaaaatataagttaagtaataaaaaaaagaggCTAATTGTTGATACAAATTCGACTAGTATAACACATAAAGATAAGCTCGTAGCTACAAATTTTGCGTCTCCAAAATCAATTTCCATTCAGTCCATAGAACCGAAATTGATTCCATTCCTTCCGAAAACACCCAAGCTAAAATGTGAATTATGCTCGTGTATGTACTCAAGTGATTCATTGCTTCAAGAGCATTTGAAAAGTCACCAACCAGTGCACACCactccaaataaattaattactgCTTTATCAAAACCTAAAACTTATGCTAATGTAACAACCACAAAAACAATTCCTACTAAACAGCCTCATCGCTTACAAACTACAAATGCAGATACAGATCATGCTTATATTATACCTGATAATATAAAAGTAGAAGATTTTGGAACCGAAACTTTGAAGTTACTTAACTCAAATGCAGATACAGATCATGCTTATATTATGCCTGATAATATAAAAGTAGAAGATTATAttataaaagtagaaaattTTGGAATCGAATCTTCGAATTTACTTAACTCAGCTGATTTTGAACTCATTTGCCCCAGTGAAGATGTAGATCCACCCCAGTATAAATGCTTGCGATGTgatcagttttttattaaagaacGTCTTTTCTTCAAACATTTAGATGAAGGAAAATGCTATGTAAATAGTTGTGATATATGTAAGGCGACTTTCGAAAAAAACAGTGAATTCTATGAACATTATAGAATTAAACATACAGAACGTTTTTGCAATTTATGCTTCCAAACATTCAAgCTATATAAGGCGgaagttcaaaaattatataagaAATACGAATCATTCTACAATCTTAAAAAGTGTGTAGTTTTGCTGGGGGATATTGAAAATGTGGACACAACAAAATATAAACTGGCTCATCAAAAACATAAACTAATTGTTGAAGTTAATCCGGCTAATATAATAAGAGACTGTaggagaaataaatataaatgtgaAATAtgcgatttaaaatttaaagattatgtTATGCTTGAATCTCACAAGGATATTCACAAACCACAACCGAATAAAATAATCGAAGTGGAAAAGGAGGAAGATACCGAAGATGTATCAACTACAAGTTCGTCATCTACCGATAGCGAAAGAGAAGAAGTCGAAAACATTTCTTCTGATGAATCAGAAAAAGATGTACAAGAAAAAAACGTGTGCGTTTACTGCAATCGTGTCTTCAAGTATAACTGGACGCTTGCCAAACATTTACGACAGCACGACCATTTGGTTTGTAGAGACtgcgttattttatttaaaagcaaaGTTGAATTGGACAAGCATATGAGTGACGCTCATAGACTCTATCCTTGTAAGATTTGTAGCCAAAAGTTTTTCtcgtttcaaaattataaaaaccatGCATTCGAAAAGCACAACGATTATAATGAAGAAGATGATCGCGTGTGTAACATATGCAAAATTCAATTTGTTAGTTTTGATCAATTAGTAGAACATAATTCGACTTTGCAGCACCAATTTAAATGTAAAGTGTGCAAAAAGGAATTATATACAGACGCTTTACTGACCAGCCACAAAAACGTTCATATTAATGCACCTCCCCACAATCTGCTGTGCAAGAATTGCACTGGTGTATTTTTCGAGGTTGCCGAATTTTATAATCATAGTCAATTTTGTAAAAAGGATACGAGTCATAAAATATGCGATATATGCTCTTTGGCTTTCATGGATTCCGATACTCTTGAAAAGCACGTTGCTACACATTTTGCGCCTCCAAAATCAACCGTTCAGCCTAAACCACCGAAAATGATCCCAATTGCACAGAAAATTCCTGAGTTTAAATGTGCATTATGCAATAAATTGTTCTTTACGGATTCAATGCTCcaggaacatttaaaaaatcatcttacggTGCATACCACTCCAAATACTGGTTTTCAAATACCTAAACCTATAACGTCTGCGAATCTAACAACCAACAAAACAATTCCGACCATACAAGTTCAAATGCCTTCATTACAGACTATAAATGCGAATAGTTTAATACAAACCAGTTTACAATCGACACCTATTATTTCAAATCCTAACATGATTACTACTAATCCTCTTATTATAAACCAAGGAGGTCAAACAAAGATACTTCTCACTTCAGATGATAAGCGATGCTTTTTATTAACCCCCGTTAGCAGTGTTCAAGAGGGCGGGGTAATAAAGTATACTGTTACGCAATCACCATCGCCACTACCTTTAAATACGCAGCCGCAAATTTTCCAAGGAATCCCAGCCTTGCAACCGATCAACAACTTTTTGCAACCGGCAATTAATCAGACAATAGTTTTACCTCCGGCACAAAATAATTCCCAAATAAGTATAACCAATCAAACTTATAACACCAGTACACCTCCTCCAAACCTCAATCAAGGTACCgcaaatatagtttttaataccGCTCCCGTAAGCAAACCTGTCGATACTAAACCGCCCCTACGAACTTACATATCTCGTCTCAAAACCACACCcactttagtaaaaattaagCCTCAAGATAATAACACAAATGTAAAACCTAGCACCAGTGGTTCTGCTGGTACTTCAAATATAACTAAACCAAAGGAAAATGCTGCTTCAGGAAACATACCAGTCAAAGCTCAAATTATAATCAAAACCATAGAGACTTCTAAAACACCTACCTActcttacaataaaattaccaaAGAAATCACCAAAATTACACCAGGTAAAACTTCAGACAAACCACGGAATCAAGAAACACCAACAAAAGCGGTGGAAAATAATGACAcgtttaaaccaaaaatatttttgaagccCCTAAGCCAGCTTTTGCAAAATCCCGTGGCATCTAATGACAAGGAAATTCCAATCACTGCCAAAGAAACCGATACTGCATTAAAAGTGAACGTTGAAAGTGAAGTAGTCGAGTCAATTATTGTTGAACCAGCAGAAGCGTCTACAAGTGAATCTAAAACTAAAATAGACCCCCTGAGTGATCTCGTTGCCGAACTCACGGCCGATGACAACGTTAAGTCTCCAATAGATCCTTTGTTAATAGAGAAAGAAAAATCTGCCGAACCAGAACCCGAAGCGGGACCCTCTAAAATCAAGGTTaaaaaagatttatcaaaaattgtcaaaaaatataaatgtagcATGTGTGGAATAAGTTGTAAAAGACAAGGAAAACTAATAGCtcatcaaaataaatataaatgtaaaatatgtaaacaCACGTGTTGCAAACTAAAGGCGTTGGATGTACACTACAGAAATATGCACCATTTTAAAAACCGTTGCGCTTCTTGCGACATGCAATTTCCAACTAATATGGAACTGCAAATTCACAAGAAGGATGTGCATTTATGCGTAAAATGCAACCGATGTTACTTAGATTTGAAGAAACACAAAACTAGTTTTACATGTTTAAATTGTGAGTTTAACGCCTGTGATTCATTCAATTTGGATGCTCATTATAGACTAGTCCATAGTATTACTACAAGATGTGGTCCGTGTAACTCTATTTTTTATACAGCTGAAAGCTTTGCGCACCATAAACAAGAAATTCATTTTTGCAGCAAATGCCGAACATACAAAATGGATTTAAATATACATAAGACGTTTTGTAAAGGAACTTCCAATGAAGAAGAAAAACAATTGGAAGATTCTCAACCGGCTGAAGTAATTGAACTTGACGAtagtgaataa
- Protein Sequence
- MGSMGELMKLCRLCLVKDKVNVPIFEGAGDIRKISQKISACLPVKVAKDDKLPKKICGSCSHKLDIVYLFWKTTTASEKQLLEWVKNAASIQEEDEDRAIEAEHIVLKQEVDNGDSEALDAGEFIDVNETFDSIGYSRHDDDDDMSNEHIAVKTENDNEPPHKKQKAVSLSSGESEEDGDDTADAYNRDDSDDEDNEMNEAQPTFVSVSDADQQPGPSGVGKSSGDAPYEEIIIDSNYDETLTSSYQCEVCMSLFVDRSEFLEHHMTRFGSTFTCCRCEASFKNSTALSRHYEEHKRDNNQLTESDILQETENENVELHYNENVEAVMNIPDDDVVYLLDEDVTEYVNEVVIADSTQNNLQQQKNRKTADSYLVHTDHGYIMPNVFKGQLECKKRPKKRNVTLHNLEEDDETTEASNLLIRMEPSTSQILYSSPKTKIFQPKRKHELPNFSTADFLLVGPNEDIDIPHYKCLRCEQLFINKLVFFRHVDKGKCYVNSCDVCMATFEKNSEFYEHYIINHPERAICNFCFRTFMYEKNVKEHMLRHLDQFRHRCEKCNKGFYTVREYRNHYKNRHMGIRHNCGECGRSFADLYYFKRHMSTHGPNLLRQNDSQKRNLKKCVDLLGDLDNLDITKYKLSNKKKRLIVDTNSTSITHKDKLVATNFASPKSISIQSIEPKLIPFLPKTPKLKCELCSCMYSSDSLLQEHLKSHQPVHTTPNKLITALSKPKTYANVTTTKTIPTKQPHRLQTTNADTDHAYIIPDNIKVEDFGTETLKLLNSNADTDHAYIMPDNIKVEDYIIKVENFGIESSNLLNSADFELICPSEDVDPPQYKCLRCDQFFIKERLFFKHLDEGKCYVNSCDICKATFEKNSEFYEHYRIKHTERFCNLCFQTFKLYKAEVQKLYKKYESFYNLKKCVVLLGDIENVDTTKYKLAHQKHKLIVEVNPANIIRDCRRNKYKCEICDLKFKDYVMLESHKDIHKPQPNKIIEVEKEEDTEDVSTTSSSSTDSEREEVENISSDESEKDVQEKNVCVYCNRVFKYNWTLAKHLRQHDHLVCRDCVILFKSKVELDKHMSDAHRLYPCKICSQKFFSFQNYKNHAFEKHNDYNEEDDRVCNICKIQFVSFDQLVEHNSTLQHQFKCKVCKKELYTDALLTSHKNVHINAPPHNLLCKNCTGVFFEVAEFYNHSQFCKKDTSHKICDICSLAFMDSDTLEKHVATHFAPPKSTVQPKPPKMIPIAQKIPEFKCALCNKLFFTDSMLQEHLKNHLTVHTTPNTGFQIPKPITSANLTTNKTIPTIQVQMPSLQTINANSLIQTSLQSTPIISNPNMITTNPLIINQGGQTKILLTSDDKRCFLLTPVSSVQEGGVIKYTVTQSPSPLPLNTQPQIFQGIPALQPINNFLQPAINQTIVLPPAQNNSQISITNQTYNTSTPPPNLNQGTANIVFNTAPVSKPVDTKPPLRTYISRLKTTPTLVKIKPQDNNTNVKPSTSGSAGTSNITKPKENAASGNIPVKAQIIIKTIETSKTPTYSYNKITKEITKITPGKTSDKPRNQETPTKAVENNDTFKPKIFLKPLSQLLQNPVASNDKEIPITAKETDTALKVNVESEVVESIIVEPAEASTSESKTKIDPLSDLVAELTADDNVKSPIDPLLIEKEKSAEPEPEAGPSKIKVKKDLSKIVKKYKCSMCGISCKRQGKLIAHQNKYKCKICKHTCCKLKALDVHYRNMHHFKNRCASCDMQFPTNMELQIHKKDVHLCVKCNRCYLDLKKHKTSFTCLNCEFNACDSFNLDAHYRLVHSITTRCGPCNSIFYTAESFAHHKQEIHFCSKCRTYKMDLNIHKTFCKGTSNEEEKQLEDSQPAEVIELDDSE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -