Sbim029530.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020183.1:31727171-31728983[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.0039 0.58 12.0 0.7 2 19 149 166 148 168 0.95 2 10 5.2 7.8e+02 2.2 1.6 1 8 176 183 176 184 0.92 3 10 0.0046 0.69 11.8 0.5 1 23 208 230 208 230 0.98 4 10 0.00017 0.026 16.3 3.7 1 20 236 255 236 257 0.94 5 10 1.7e-07 2.6e-05 25.7 1.9 1 23 302 324 302 324 0.95 6 10 1.4e-07 2.2e-05 26.0 1.6 1 23 333 355 333 355 0.94 7 10 0.00041 0.061 15.1 5.6 1 23 364 386 364 386 0.97 8 10 0.00013 0.02 16.7 2.4 1 23 395 417 395 417 0.98 9 10 3e-05 0.0045 18.7 2.6 1 23 423 445 423 445 0.98 10 10 0.0041 0.62 11.9 7.2 1 23 451 474 451 474 0.97
Sequence Information
- Coding Sequence
- atgGATTCGGGGCCTTATAGTTGTGACATCAATGAAGGTTTTACCATGAGAGTATTAGAATGCGAAGATTTATCAATCCCAGATAACTTTACTGTATTAAAAGAGGAAACGTTGGACATGGACGATAATCTGGAGGAACTGAATGAAATTTCTTTGCTGGGCAAAGGCGACGCTATTATAGACAGAAGAAAAACAATCGAAGAAGAAATTTGGGCTGATGATGATGATCCACAACTGGAAAAACAGTCTATGTATGACTTGGGAGAAGAGTTTCAATCACGACCACCAGATGATCAAATTTTAACCCATACAGAAAAACCGTTACTGGAGTTGAATCACAATCAATACTCGTCGAATCACAAGGACTTCAACTTTAACGCAGAGCcagaaaaatatacaattttacaaACCCAATCAAAGTTGCAGAATCAAGTAAATTTACTCAAATGTGTAGATTGCAATTTCGACTTTCGGCGAAAAGTTAGTCTTCGAAGCCATTCATATTTAAACAACAAAGAAAACGCGTTTAAATGCGGTCACTGTAATAAAGAACCTAGTACCACAGGAATCGTTCCCAAAAATGCTGTTAAAAGATCTAGGACTCAAAAGTATACAAAAGACTTCAAATGTTATCAATGCGGTGaaatatttttgcttaaaaGTAGTCTTGACAAACACTTACtaattcatgaaaacaaaaaatcttacaaatgCCCGGTATGTAGTAGAAATTTTACCCGGAAATGTAATCTTTTGGCACATGCGTGCAAAGTTCTAAAATCACAGGGAAAGGTTCAAGGCATTCCAAAATCCAATTCTGATCAACCCAAaaaggttttgaaaaaaatttcttatccGAACTTTAATTTACAGGCACAGAATTCTAAATCTAGAAATAAAAGATTTAGGTGTTCAGAGTGTGGTAAAAAGTTTGCAAATAAGTCAAATCTAAATCGTCATAGTTTTATTCACTCCAGtgtaaaacagaaaaaaacattTGAGTGTTCAGAGTGTGGTAAAAAGTTTGCAAATAAGTCAAATCTAAAACGTCATAGTTTTATTCACTCCAGTGTAAAACAGAATAAAAGACATAGATGTTCAGAGTGTggtaaaaagtttttagatAATTGGCATCTAAATCGTCATAGATTTACTCACTCCAGTGTAAAACAGAATAAAAGACACAGATGTTCAGAGTGTGGTAAAAAGTTTTTGGATAAATGGGGTCTAAATCGTCATAAACTTACTCACTCCGAGGTAAAACCATTCGAATGTAATTACTGCAATAAAAGGTTTGTTGCGAAACATTATCTTATGCAGCATATAACCATACACACGAGCGAAAAAAGATATAAATGCAAGCAATGCAATTCTAAGTTCAGATTTagtagcgatttttcaaaacataTCCACCGTTTTCACTTGAAAACATAA
- Protein Sequence
- MDSGPYSCDINEGFTMRVLECEDLSIPDNFTVLKEETLDMDDNLEELNEISLLGKGDAIIDRRKTIEEEIWADDDDPQLEKQSMYDLGEEFQSRPPDDQILTHTEKPLLELNHNQYSSNHKDFNFNAEPEKYTILQTQSKLQNQVNLLKCVDCNFDFRRKVSLRSHSYLNNKENAFKCGHCNKEPSTTGIVPKNAVKRSRTQKYTKDFKCYQCGEIFLLKSSLDKHLLIHENKKSYKCPVCSRNFTRKCNLLAHACKVLKSQGKVQGIPKSNSDQPKKVLKKISYPNFNLQAQNSKSRNKRFRCSECGKKFANKSNLNRHSFIHSSVKQKKTFECSECGKKFANKSNLKRHSFIHSSVKQNKRHRCSECGKKFLDNWHLNRHRFTHSSVKQNKRHRCSECGKKFLDKWGLNRHKLTHSEVKPFECNYCNKRFVAKHYLMQHITIHTSEKRYKCKQCNSKFRFSSDFSKHIHRFHLKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -