Sbim016511.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- topi
- Assembly
- GCA_963971135.1
- Location
- OZ020182.1:676940-681632[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.00064 0.097 14.5 2.4 2 21 121 140 120 141 0.94 2 13 3.7e-06 0.00056 21.5 0.9 1 23 166 188 166 188 0.98 3 13 0.025 3.8 9.5 3.9 3 23 196 216 195 216 0.95 4 13 5.3e-06 0.00079 21.1 1.1 2 23 300 321 299 321 0.97 5 13 4.8 7.2e+02 2.3 0.1 1 14 327 340 327 348 0.77 6 13 0.035 5.3 9.0 4.6 2 22 364 384 363 387 0.88 7 13 0.029 4.4 9.3 0.4 1 23 504 527 504 527 0.96 8 13 0.0028 0.42 12.5 0.6 1 23 531 553 531 553 0.97 9 13 2e-06 0.00031 22.3 2.9 1 23 559 581 559 581 0.98 10 13 0.024 3.6 9.6 0.2 1 23 587 612 587 612 0.96 11 13 0.22 33 6.5 3.3 1 23 618 640 618 640 0.86 12 13 2e-06 0.0003 22.4 0.6 1 23 646 668 646 668 0.98 13 13 2.9e-06 0.00044 21.9 0.7 1 23 674 697 674 697 0.98
Sequence Information
- Coding Sequence
- ATGAGTAAAAGTGATCAAGAGATTAATATTGGACAGATATTTTCCTCAGATGGTGAGATTAATTCGATAGCATGTACATTTGATAAAACTACCAACAAGCTTATAAAACAAGATTCAATAACTCCACTcgcaaaagtttttgaaattttagcaaATCATTCCCACCCGAATGACAAAAAGCTAAATGTGCCTTACGACACAGATTTCGATAAAGTGCCCCTAATAATTGATGTAGTTAAAGCAGAGAAAGATGTGGTTTCGAGCCCTAATGGTGATCCTTTACATTTAAATCAACTTTCACAAAACTCAATTGATACTTACAATTCGTTCCAAAAAGTCTTCAACATTTCTGAAATGGTGCGCTGTCAGAACTGCGACACTAATTTTCCCACAAAATATCAATTCCAGCGACACCAATGCGAGTTTAATGctgaaaaaattgtattaaaaccTAATGTTGATGTAAAAGATGTGCAAAGGGGTGTGCGAATGAAATTTGAATGTTCCACTTGCGGAAAGCTTTTtgttagtaaaaataatttagaaagaCATTTAACGAGTCACGATGAAGACAATGTTAACATCTGTGAGCATTGTAATAAGCATTTTGTAAGCGAAAATCGTTTACGTATACATAAAGAAAATCACTGCAAAAAAGCAGGTGATATCTCAAAATTCTATCGTAGCGATGTAAAGGTTTATAAATGCATTAAGTGCTATCAAGTTTTTTCATCTGATGTATTCGCTTATAATCATGCTGAAAATTGCTCCGAGATATATGATTTGaacgaaattaataatattctaGTCGAGGATTTGTTTAAGACGGAAAAAATTGAAGGCGCATTAATAAATGGTAGTCGATTCATTCAAGTGGTTGTAACCGAAACATTATTACAATGCGAGTTTTGCAATAAAACTTTTGCTGATAAAAAATCTTTGATAACTCACCAAGATACACATACTACAGCtgttaattataattgtgttttttgtgAAGAAACTTTCGATTCATATGTGGTTGCAGCGAAACACTGGTTAACTAAATGCACTCACGAtgctaatttatttttcttacctAAACTAACGTATTGCCATGAATGCGATAGGACCTTTAAATCGCATGAAGTACTTTActctcataaaattaaaaagaagcaTTATACCGCTAAGAagtatgaaattattaaaaatgatacgGCGATAGAgcttaataaacaaaatgggcCTCAAATACTTAATATAATCGAAGGGGCCATGGGgactagttttaataaatcaccGAATCAAGTGGAATTGCAAGAGGTGGAAGTTAGAGATTATAAAGTTGAAGAAACATTAGAGAATGTTTCGGTGAGTGAAAATGATGATGTTGTTAAAACCGATGATTTCGAGGGAGATTCTGTGAATGGTAAAAAAAAGCGAGGTAGGAAGAGGAAAAATGTTTTACCCATCGACAAGGTCAAGCGGTTTACTGTTAATTTAGATAACCAAGATTGCGGGTTTAGATATCAATGCGAGCGATGCTTGCTGGTTTTTAAAACCATACAGAGTTTGGAGGGGCATCGAGATAAAGATCATCCGGCTAATTATAAATGCGAAGAGTGCAATCAGgttGTTCATAGTTCAAAAGCTTTGATGATACACAGCAGGGCTCATCAAAGACTAAAACCGTACGTTTGTGAGATTTGTAAGCGGTCTTACTCACAAACATCTCACCTGTGGCAACATATGCGGTTTCATCAagGGATTAAACCATTTGCTTGTCCACATGAGGGGTGCGAAGCAAGGTATACTATAAGACCAGACTTAAAGGATCACATTAGGAAGGTGCATACTAGAGAAAGACCTTTCAAGTGCTCGGTCTGTAATAAATGCTTCCTTACTGGCTCGGTGTACTACCAACATAGATTGATTCATACGAATGACCGAAGATATGCTTGTAATGTTTGCAACAAGAGATTTTTCCGAGCCGATGCTTTGAATAACCACAGGAGGATCCATACAGACGAAAGACCTTATCCCTGCGAAATTTGTGGGAGAAATTTCAGGCAAAAAGGTGATCGTAATAAACACGTGCGGACTCAACACCCTAATGCTCACGTTTAG
- Protein Sequence
- MSKSDQEINIGQIFSSDGEINSIACTFDKTTNKLIKQDSITPLAKVFEILANHSHPNDKKLNVPYDTDFDKVPLIIDVVKAEKDVVSSPNGDPLHLNQLSQNSIDTYNSFQKVFNISEMVRCQNCDTNFPTKYQFQRHQCEFNAEKIVLKPNVDVKDVQRGVRMKFECSTCGKLFVSKNNLERHLTSHDEDNVNICEHCNKHFVSENRLRIHKENHCKKAGDISKFYRSDVKVYKCIKCYQVFSSDVFAYNHAENCSEIYDLNEINNILVEDLFKTEKIEGALINGSRFIQVVVTETLLQCEFCNKTFADKKSLITHQDTHTTAVNYNCVFCEETFDSYVVAAKHWLTKCTHDANLFFLPKLTYCHECDRTFKSHEVLYSHKIKKKHYTAKKYEIIKNDTAIELNKQNGPQILNIIEGAMGTSFNKSPNQVELQEVEVRDYKVEETLENVSVSENDDVVKTDDFEGDSVNGKKKRGRKRKNVLPIDKVKRFTVNLDNQDCGFRYQCERCLLVFKTIQSLEGHRDKDHPANYKCEECNQVVHSSKALMIHSRAHQRLKPYVCEICKRSYSQTSHLWQHMRFHQGIKPFACPHEGCEARYTIRPDLKDHIRKVHTRERPFKCSVCNKCFLTGSVYYQHRLIHTNDRRYACNVCNKRFFRADALNNHRRIHTDERPYPCEICGRNFRQKGDRNKHVRTQHPNAHV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -