Sbim004622.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:34884395-34885763[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 7.6e-05 0.011 17.4 2.3 1 23 136 159 136 159 0.96 2 11 0.0011 0.17 13.7 0.5 2 23 165 187 164 187 0.95 3 11 0.012 1.7 10.5 0.1 1 23 192 215 192 215 0.93 4 11 0.029 4.3 9.3 0.0 6 23 228 245 228 245 0.97 5 11 3.1e-05 0.0047 18.6 0.2 1 23 250 272 250 272 0.94 6 11 7.9e-07 0.00012 23.6 1.6 1 23 278 301 278 301 0.96 7 11 0.00012 0.017 16.8 1.5 2 23 307 328 306 328 0.95 8 11 0.043 6.5 8.7 0.1 2 23 335 355 334 355 0.96 9 11 1.7e-05 0.0025 19.5 2.3 1 23 361 383 361 383 0.98 10 11 0.00021 0.031 16.0 1.3 1 23 389 411 389 411 0.95 11 11 2.8e-05 0.0042 18.8 6.5 1 23 417 439 417 439 0.98
Sequence Information
- Coding Sequence
- ATGTGTTTTCAAACCATGAAAACTGAAGATGTGGAAATTAAAGATGAGAATGTATTTATCAATTCCAATAGTATAGAAGAAAGTGATAATAGAGAACAAACaccaaatattaataatgatgaCAATAGCATGGAAGAATCTCGTGATAATGTAGAATTAAATGatgttaacaaaaataatagtaatattacattttttatacaccCCATTGCATCCAACACAATTATTCAAGACACAAATAATACTCATTTATTATGTTCAACCccaaataatataattaatataaatacaaattctGTTAATATTCCAACTGATGAAATTAATAAGCAAAATGTGACTGATAACACTACTCCAGAAGACGATTTAAATGCTTCATTATCTGATGATTCTAGTGCCAAGAAAAGATATTCCTGCAGGCTAtgtgataaaaaatttaccaaactGGGTTCATTAAATTCTCATCGAAAATTAACACATAACGAATCTAAAAGCACATGTTATATATGTGGGGAAGTTTATAAAAGGAAATTAAAGATGTATGCACATATGAATGAAAAGCACAACAACGGCATTTTTGCTTGTTGGGACTGTAATACAATTTTACCGAATTCCTGGGCTTTGAAACAACATCGAGAGAATGATCATAATGATGACAAAAATGCTGAAAACAAATGTATTCCCTGTGGTCTATCTTTCGAAACATGGAGAGAGTATGTTTCTCACATGTCAGGACATCTTCAGAAGTCATTTATTTGTAAGATCTGTTCCAAAGCTTTTACGAGTAAAGCTTTATTAAGCAACCATGAAGTAGTCCATTCAGatAAACGTGAGTATTCTTGTGAAAAATGTGATAAGAGTTATAAAACACAAAGTACTCTGCGAACTCATGTGAATAATGTGCATGCTGAGAATAATTGCCCTTGCGATGTTTGTGGCTCAGTTTTTAAATCGTATCTTTATTTGAGAAGGCACCAAAAGATACATACAGATAGCTATAAAGTACAATGTGAGATTTGTGGTGTAAACTTAACCACTTCTGCCATGAGGACTCATATGAATAATCACCTAGGAAAACGCCCTTTCAAGTGTGATACCTGTGAAAAATCATTCTCCCAtgcaaatttactaaaagaaCATAAATTAATTCACGAGGGAATTAAACCATTCCTTTGTTCTATTTGTGGAAATAGTTTCAGGACAAAGGCAACTTATTATAAACATAAACTTGTGCATACTGGCGAAAGAAGGCATGAATGTACTATTTGTAAGAAACGGTTTCCTTTGCCACATCATTTAAAACTTCATATGAAAACACATtag
- Protein Sequence
- MCFQTMKTEDVEIKDENVFINSNSIEESDNREQTPNINNDDNSMEESRDNVELNDVNKNNSNITFFIHPIASNTIIQDTNNTHLLCSTPNNIININTNSVNIPTDEINKQNVTDNTTPEDDLNASLSDDSSAKKRYSCRLCDKKFTKLGSLNSHRKLTHNESKSTCYICGEVYKRKLKMYAHMNEKHNNGIFACWDCNTILPNSWALKQHRENDHNDDKNAENKCIPCGLSFETWREYVSHMSGHLQKSFICKICSKAFTSKALLSNHEVVHSDKREYSCEKCDKSYKTQSTLRTHVNNVHAENNCPCDVCGSVFKSYLYLRRHQKIHTDSYKVQCEICGVNLTTSAMRTHMNNHLGKRPFKCDTCEKSFSHANLLKEHKLIHEGIKPFLCSICGNSFRTKATYYKHKLVHTGERRHECTICKKRFPLPHHLKLHMKTH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -