Basic Information

Insect: Stenus bimaculatus
Gene Symbol: ham
Assembly: GCA_963971135.1
Location: OZ020187.1:1365037-1390594[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 0.049 7.3 8.6 0.5 2 23 239 261 238 261 0.92

2 9 0.00044 0.067 15.0 3.5 1 23 268 291 268 291 0.96

3 9 1e-08 1.5e-06 29.6 2.2 1 23 297 319 297 320 0.96

4 9 1.1e-05 0.0017 20.0 4.5 1 23 326 348 326 348 0.95

5 9 3.6e-05 0.0054 18.4 5.0 1 23 354 376 354 376 0.99

6 9 0.00071 0.11 14.3 0.7 2 21 384 403 383 404 0.95

7 9 1.2e-08 1.8e-06 29.3 0.7 1 23 714 736 714 736 0.98

8 9 1.6e-06 0.00024 22.7 1.6 1 23 742 765 742 765 0.97

9 9 3.6e-06 0.00055 21.6 3.4 1 23 771 793 771 793 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	0.049	7.3	8.6	0.5	2	23	239	261	238	261	0.92
2	9	0.00044	0.067	15.0	3.5	1	23	268	291	268	291	0.96
3	9	1e-08	1.5e-06	29.6	2.2	1	23	297	319	297	320	0.96
4	9	1.1e-05	0.0017	20.0	4.5	1	23	326	348	326	348	0.95
5	9	3.6e-05	0.0054	18.4	5.0	1	23	354	376	354	376	0.99
6	9	0.00071	0.11	14.3	0.7	2	21	384	403	383	404	0.95
7	9	1.2e-08	1.8e-06	29.3	0.7	1	23	714	736	714	736	0.98
8	9	1.6e-06	0.00024	22.7	1.6	1	23	742	765	742	765	0.97
9	9	3.6e-06	0.00055	21.6	3.4	1	23	771	793	771	793	0.99

Sequence Information

Coding Sequence: ATGGAACAAACGATGGTGCCTTCATCTAGCGACAACGACTACAAATTCCAAGAATTTTCCAACAACAACGCCCCGAGTCACGAAGAAGTCGACCAAGACAAGCACGACTTGAAATCAGCCCAACTTTTCTACAAAAACGGCAGCATGGAGATGCTCGAAAATTTCTACGACGCCAAAAAATTAATGTCGTTAAGACTTAACGGACTAAAAACAGGCGCCGATTTCAACAACTTCTTACGCAGGgatttccacaataatttattaCCACTAGAGTTGGAGTTGATGGAGAATGGAATTTTCACTAAACATAGTTTAGCGAAAGGAACGAGATATGGGCCGTTTCAAGGAAAATGGGCTGGAACTCCTCATGATCATAGATTTGCTTGGGAGgtTGTTGCTGGTTCTGGTGTAAGAGGATGGTTAGATGGTTCTTTGGAACCTCATAATTGGTTAAAGTTGATCAAAAGCGCCCCCACTAAAAGTGGTGCTAACATGAGGTACTTCCTACAAGGTGGACAGcTTTGGTATGAAACTAGTGTTGATATTCCTGCAAGAGTTGAATTAATTTTGGAACCACGAGAGGCTTTAAATTTGCAAGATATGTTTGGAGACTCTACTTCAGCTGACGAAAGATCCGATAGAGAAACAGctTCACAACATAGTGGTACTGTTGAAGACGAACGTGATGATGTTGATGAGGAAGATAACGAAACTAGGTGCTGCGTGTGCGATCAACCTTTTACGGACATTGATAAactaGATGAACACCTCGTAATAAAACACAACTATAGAAAAGACGAATATCGATGCGAACATTGCCCAAAAGCGTATGCCCATCGACCTTGCTTGATAAGACACCGTTCTGTGGTTCATGGTGAACACAGAAAATACAACTGTGAAAATTGCACtaagGTTTTTACTGATCCAAGCAACCTCCAAAGGCACATCAGGACGCATCACGTTGGAGCTCGTTCCCACGCCTGTCACGAGTGTGGCAAAACGTTTGCCACATCTTCAGGTCTAAAACAACACACGCATATCCACTCCAGTGTAAAGCCTTTCCAGTGTGAAGTGTGCTTTAAGgcTTATACACAATTCTCCAATCTTTGTCGTCACAAACGAATGCACGCCGATTGCCGAATGCAGATCAAGTGCGTAAAGTGTGGCCAATCGTTTTCCACGGTGACCTCACTATCAAAACACAAGCGTTTCTGTGATTCAACCGCCTCGACGACAAACCTGAACCCGCCAGCTCAACTCACGCTAAATCCAATGAATAGTACCAACTGTTTTTCGATGTATCGACCACCTCCAGGAATGCCATTTTTTCCACCACAATTCCCACCGTATCCCCAAATGTTCCATCCTTCCACCCACCCTTCAAGCTTCATCAACAACATCAGCAACCTCTTCTTCAACAATCACATGCCGAAATTAAAAACCGAAAACGAGCTATCTCCACCGAAAAAACTACGAACAGCAAGTCccgaagaaaatattaaagaccGCTTTACTCCACCACGGGTGCCTAGTAATAACGCGAAAGTCAGCCCACCCACTGCAGAAGAAGCGAACTTAACACCAAGCCCAGCAAGACCATTACCAAGCACAAACACCTACAAAAATAACACGTCAGACGAGGAAGAAGTTTTTGCGAAAGATTTATCCAAACCAAATGAGCTCAACGAAAAATCCTGCAGCAGCGATGAAGATACTGAAAAACCACTCGATTTAAGTATCGGTTGGAAGAAGGAGCAAAAAGATAACAAAGAAATTAAACAAGAAATCCCTGCAAGTACTCAAATCAcacctaataaaattaaagaagaaaaaatcgaAGTTGTAGACGTTGAGGAGGTGGATGTAAAAGAAGAGAGTAAAATTTACGATAAAGCGCCTACAATGGCGTATCCTCGACCGATTCATCCCTCGATGATTTTTGATATGTACAGGCCTAATTTTGGGTATCAAAATCAAAATGAGAGATTGTTACCGCAGTTTGTACCTCCGCGTTTTCCGTTTTTGGGGCAGCTGCAGCAACAACGCGGGTTTGATTTGTTAAGGCCGAATTTCAGTGGGGTTAAGCCTTATCACGATGTTATCACGCAACAGCAAGTGCAAGGGAAGATTAAAGATCGCTACGCTTGTAAATTTTGCGGTAAAGTGTTTCCACGTTCAGCGAATTTAACGAGACACTTACGAACTCACACCGGAGAACAACCGTATAAATGTAGATATTGCGAAAGAAGCTTTTCAATTAGTAGTAATTTACAACGACACGTTAGAAATATTCATAATAAAGAAAAACCTTTCAAGTGTCCTCTATGCGATAGATGTTTTGGACAACAGACTAATTTAGATAGGCACTTGAAGAAGCATGAAGCAGATGATGGAAGTGGTGGAGTCGCTGTTGCTGATTCTCCAGGTAGCAGTAATGAGAATGAAAGGGAAGACGCGTGTTTCGAGGAGATTAGGAATTTTATGGGTAAAATCACGAGTGTTGATAATTACAACCAAACTCGCTTATACACACCTCCGCACTCACAAGGTATCATTGATGTTGTTGGAAGAGACGATGAAGATTCGGAAACGTATTCGGAAGAATCACCTCCTGAAGATTTCTCAACGAATAAACTAGAAAAGAATGAAATTCTCAACAATAATGATCAAATGGAAGTGTCGACTTAG
Protein Sequence: MEQTMVPSSSDNDYKFQEFSNNNAPSHEEVDQDKHDLKSAQLFYKNGSMEMLENFYDAKKLMSLRLNGLKTGADFNNFLRRDFHNNLLPLELELMENGIFTKHSLAKGTRYGPFQGKWAGTPHDHRFAWEVVAGSGVRGWLDGSLEPHNWLKLIKSAPTKSGANMRYFLQGGQLWYETSVDIPARVELILEPREALNLQDMFGDSTSADERSDRETASQHSGTVEDERDDVDEEDNETRCCVCDQPFTDIDKLDEHLVIKHNYRKDEYRCEHCPKAYAHRPCLIRHRSVVHGEHRKYNCENCTKVFTDPSNLQRHIRTHHVGARSHACHECGKTFATSSGLKQHTHIHSSVKPFQCEVCFKAYTQFSNLCRHKRMHADCRMQIKCVKCGQSFSTVTSLSKHKRFCDSTASTTNLNPPAQLTLNPMNSTNCFSMYRPPPGMPFFPPQFPPYPQMFHPSTHPSSFINNISNLFFNNHMPKLKTENELSPPKKLRTASPEENIKDRFTPPRVPSNNAKVSPPTAEEANLTPSPARPLPSTNTYKNNTSDEEEVFAKDLSKPNELNEKSCSSDEDTEKPLDLSIGWKKEQKDNKEIKQEIPASTQITPNKIKEEKIEVVDVEEVDVKEESKIYDKAPTMAYPRPIHPSMIFDMYRPNFGYQNQNERLLPQFVPPRFPFLGQLQQQRGFDLLRPNFSGVKPYHDVITQQQVQGKIKDRYACKFCGKVFPRSANLTRHLRTHTGEQPYKCRYCERSFSISSNLQRHVRNIHNKEKPFKCPLCDRCFGQQTNLDRHLKKHEADDGSGGVAVADSPGSSNENEREDACFEEIRNFMGKITSVDNYNQTRLYTPPHSQGIIDVVGRDDEDSETYSEESPPEDFSTNKLEKNEILNNNDQMEVST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -