Basic Information

Insect: Stenus bimaculatus
Gene Symbol: -
Assembly: GCA_963971135.1
Location: OZ020180.1:32562304-32576146[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 9 2.9e-06 0.00043 21.9 1.7 1 23 239 261 239 261 0.98

2 9 2.8e-08 4.1e-06 28.2 1.6 3 23 269 289 267 289 0.98

3 9 0.00021 0.032 16.0 0.4 1 23 295 317 295 317 0.98

4 9 1.6e-06 0.00025 22.6 1.1 1 23 323 345 323 345 0.99

5 9 2.1e-05 0.0031 19.2 1.7 2 23 458 479 457 479 0.96

6 9 2.7e-09 4e-07 31.4 1.6 1 23 485 507 485 507 0.98

7 9 0.00061 0.091 14.6 0.6 3 23 515 535 513 535 0.97

8 9 8e-05 0.012 17.3 1.4 1 23 541 563 541 563 0.99

9 9 0.018 2.7 9.9 0.8 1 23 569 593 569 593 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	9	2.9e-06	0.00043	21.9	1.7	1	23	239	261	239	261	0.98
2	9	2.8e-08	4.1e-06	28.2	1.6	3	23	269	289	267	289	0.98
3	9	0.00021	0.032	16.0	0.4	1	23	295	317	295	317	0.98
4	9	1.6e-06	0.00025	22.6	1.1	1	23	323	345	323	345	0.99
5	9	2.1e-05	0.0031	19.2	1.7	2	23	458	479	457	479	0.96
6	9	2.7e-09	4e-07	31.4	1.6	1	23	485	507	485	507	0.98
7	9	0.00061	0.091	14.6	0.6	3	23	515	535	513	535	0.97
8	9	8e-05	0.012	17.3	1.4	1	23	541	563	541	563	0.99
9	9	0.018	2.7	9.9	0.8	1	23	569	593	569	593	0.95

Sequence Information

Coding Sequence: atgcacccccCTGGGATGGAAGCTGGCTACGCCCCTGACTACACTGCTCAACAATTGATAGGGATCAAGGCAAATTCTCTTAAGAATTCAACGGCGCCTTATGTCCTTTACAAAGATGGCATCGACCGTACCCAAATGCAGTGGGGTGCTCAAGAAAATTACTCAGCAACACCACAACACAATTCTTCGGGCGCTGGAAGCCCGCAGCAGGCGTTGGGGCCTACAGTACCCCTGGGGGTTGAGGCGGATACTGTGACGCCGAGAGATCAAAGCTTACCGTCACCGGCGCCTTCACCTTATCCTGCGGCACAGGCAGAACCTCGCGAAGATGATCTCCCAAACGAACAACCGAGCTTGGACTTGGAACCACGACCTGCCTCACAGTGCTTTCCCACGGATCTCCAACAGCAGCAGCAACAACAGACATACCAGCAGTATACGAGAGCTCCTCCACCTCCGTCAGCACCACCTCCAGTGCCGCCGCATATGCTGGGCGCTGGTAGCTTTTCCGCCTTGCACTATCTTAAGCAACCGGGCGTCATGCTCACGTCCATTGGTCCTGATAGTACACAGCTTGATCAATATGTAGGAAGCACCCAGCATGCcatgGACATTCGAGCAGCATCTTTACCCGATGTAATCCAACAACAGCAACAGAACGGCCTGAAACAAAATGTGAAGCCAAACGGCTTGGGCGGCGGCGACCTCCGCCTTTTCAAATGTCTAACCTGCGGCAAGGACTTCAAGCAAAAATCCACCCTCCTGCAACACGAGCGTATCCATACAGACAGCAGGCCTTACGGATGTCCAGAGTGCGGTAAGCGGTTCCGACAGCAGTCCCACCTCACGCAGCACCTCCGCATCCACGCCAACGAGAAGCCCTACGCTTGTGTCTACTGCGAGCGAACGTTTCGTCAGCGAGCCATCCTTAATCAGCACCTGCGCATCCATTCCGGTGAGAAGCCATACGAGTGCCCCGAATGCGGCAAGCACTTTCGACAGAAGGCCATCCTCAACCAGCACGTCCGCACACACCAAGatgTAAGTCCACACTTGGTATTCAAAAATGGCATAAATCCAACCTTGTGGCCGCAAGACGTGCCTTTTCCAACTGAAGAACCCGGTAAAGAAGAAGTTGCTTCTACGTACGGTGATGGAGATTCGCAAAATGACCGCACTGGATGCTTCTCCCCTGGAAGTGTAAATGGTAACCTTCAATACCCAGCTTATTTCAAAGATCAAAAAGGAATGAACCATTCCGTATTTGGTACTAGTAATTTTAACGCACTGCAGTACCTTAAACAGGGTCAAAATAAGGGACTACCCGATGTGATTCAACACGGAAGATCAGCGGGGATGCCCCTTTATGTGAGGTGTCCAATTTGCCAAAAAgaattcaaacaaaaatcgacGCTCTTGCAGCATGGATGCATACATATCGAGTCTAGGCCATACCCTTGCCCGGAATGTGGTAAGCGTTTTCGGCAGCAGTCGCATTTAACGCAACATTTGAGGATACATACGAATGAGAAGCCTTACGGATGTGTTTATTGTGGTAGGAATTTCAGACAGCGCACAATCTTGAACCAACATTTACGTATACATACAGGGGAGAAGCCTTACAAATGTCAGCAGTGTGGGAAAGATTTTAGGCAGAAAGCGATTTTGGATCAACATACAAGGACGCACCAAGGTGATAGGCCGTTTTGCTGCCCAATGCCGAATTGCAGAAGACGGTTTGCTACTGAACCGGAGGTTAAGAAACACATTGACAACCACATGAACCCCCATGCAGCCAAAGCTCGTCGCGATTCCATCGGATCAATCTCTGATGGTAAACTTACTAATGGTATGCTTCCACGAGGATTGACTCCAACAGCCGTGGTCAAGCCGGAACTGTACTTCCCGCAATGTTACGCACCCAGCTTCAACCCTCCAACGAGTTTGGCCCAATTTCCAGCACCCACCCCTGAGTTCAAGCCACCGAACGGTCTTCCGGCACAGTGA
Protein Sequence: MHPPGMEAGYAPDYTAQQLIGIKANSLKNSTAPYVLYKDGIDRTQMQWGAQENYSATPQHNSSGAGSPQQALGPTVPLGVEADTVTPRDQSLPSPAPSPYPAAQAEPREDDLPNEQPSLDLEPRPASQCFPTDLQQQQQQQTYQQYTRAPPPPSAPPPVPPHMLGAGSFSALHYLKQPGVMLTSIGPDSTQLDQYVGSTQHAMDIRAASLPDVIQQQQQNGLKQNVKPNGLGGGDLRLFKCLTCGKDFKQKSTLLQHERIHTDSRPYGCPECGKRFRQQSHLTQHLRIHANEKPYACVYCERTFRQRAILNQHLRIHSGEKPYECPECGKHFRQKAILNQHVRTHQDVSPHLVFKNGINPTLWPQDVPFPTEEPGKEEVASTYGDGDSQNDRTGCFSPGSVNGNLQYPAYFKDQKGMNHSVFGTSNFNALQYLKQGQNKGLPDVIQHGRSAGMPLYVRCPICQKEFKQKSTLLQHGCIHIESRPYPCPECGKRFRQQSHLTQHLRIHTNEKPYGCVYCGRNFRQRTILNQHLRIHTGEKPYKCQQCGKDFRQKAILDQHTRTHQGDRPFCCPMPNCRRRFATEPEVKKHIDNHMNPHAAKARRDSIGSISDGKLTNGMLPRGLTPTAVVKPELYFPQCYAPSFNPPTSLAQFPAPTPEFKPPNGLPAQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01330021;
90% Identity: -
80% Identity: -