Sbim005119.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- prdm10
- Assembly
- GCA_963971135.1
- Location
- OZ020180.1:40508697-40529453[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 3.5e-06 0.00053 21.6 2.7 2 23 262 284 261 284 0.95 2 12 0.0031 0.47 12.3 0.8 1 23 367 389 367 389 0.97 3 12 1.1e-05 0.0017 20.0 0.8 1 20 393 412 393 413 0.96 4 12 3.7e-07 5.5e-05 24.7 2.4 1 23 422 445 422 445 0.97 5 12 0.46 70 5.5 2.2 3 20 452 470 451 471 0.92 6 12 3.1e-07 4.7e-05 24.9 1.3 2 23 478 499 477 499 0.96 7 12 0.0032 0.48 12.3 2.3 3 23 510 530 508 530 0.95 8 12 9.1e-05 0.014 17.2 1.3 1 23 536 558 536 558 0.98 9 12 8.1e-06 0.0012 20.5 0.5 1 23 564 586 564 586 0.96 10 12 1.6e-06 0.00025 22.7 1.3 1 23 592 615 592 615 0.98 11 12 0.0002 0.03 16.1 0.3 2 23 618 639 617 639 0.97 12 12 0.0021 0.32 12.9 2.8 1 23 644 667 644 667 0.97
Sequence Information
- Coding Sequence
- ATGAATACAGAAAATAGACGTATTAACAGGAAGTCTGCCGTACTCGGAAATATCCCTAGCGGGAATGAAAAAAGCAAAAGACGTGGATTGGGGAGTAACAGCAGAACAATTAATATTTGTGGTATATGTGGTTTAAATCATGTTGCTAATAAAtgtgaaattgttgaaattaaaTACCATGTAAAAGACACTCCAGTTTTATCAAAAGCTCGATTGTCTCTTCCGAAATCACTTGAACTACAATCGATGGTCGGAGGAGTACTTTCAGTAACTGCTAAGGAATACATCGATTCTGGTACTAAGTTTGGTCCATTTGAagcaaaaaaagtatttactcCTGATCTAAATATAAacttttctcttaaaatatttcaaacggAAGAGCTATTTcaacaattatatttaaataattctaacgAGGATGAGTGCAATTGGATGTTTTTTGTGCAACCTGCAGAATCAAAATGTGATCAAAACCTGGTTTGCTACCAAGAAGgtgctaaaatatattttacttcAATTAGAGATATTCTAAGAGGCGAACATTTAAAAGTTTGGTATTCACCTTATTACGCAGGAAAAATGGATAAACCCTTACTATCTGAAGACAAGGAAAATTATTTGAGGGAAGATGTTGTAAATTTAGATATAGATTTGGAAAAACCCCAACAGAATGATTCAGATGAAACTGTctacaaatgtaaattttgtaatttagagGAAATTAATTCTGTAATCTTtgcaaaacacttaaaaaaccACTATACGATGCAAATGTATAAATCTTgtgaaaaatgcaataaaaaattcCGTACTAAACagAGTTTGAAAAAACACATGGAAGTTGTTCATTGGGTGAAAGAATCAAGAAACAATAATAATGACAAAGATCCATGTAGAAATGATAATACACAGGAAGGTTTGGGAGGTCCTCTCTTGAATAATGAGTACCTGAatatggaaaataatttattagacgATGAAATTAATGAGAATTTTAGTTTGGAAAACCCTagtattaatttggaaaatgattttaatttaaatattaatgaaaattataatctcagttttaattttcttgaatcaAACGATTCgtatttttgtgatatttgtttaaaaagtttttcaggATTAAAATGTCTCATTATGCATTTAGCAATACATACTGAAGAATATACTTGCAGTAAATGTAAGAAGGCATTTTCACGGAAAGAAAGTTTAGAAAACCATACAATCTGTAATCCTGAACGATTTGGCACATTTAAATGCAATGATTGTGATAAGACTTTCATCACAAGAAGGAATCTTACGAGTCATGTACGTCAACGCCATAATGATTATAATGTTTTGTGTAAATCCGGCTGTAAGAAGAAGTTTTCTACAGAAGAAGCCGCTAACAAACACAAGTGCCCTTTAAAACTAAACTTAAGCTGTAATATTTGTGATAAAAAGTTTaatacacaaaaatatttaagaagacATATGATTATTCATTCCAATAGTGGTACAAAGAATCAACATTTATGTGAAATTTGTTCAAGCACATTTTCTTCATCAAAGTTGCTTTATCAGCACCAGCTGTCACATagggacaataaattatttacttgcAATATCTGTGATAAGTCTTTTAAGTGGAGGTCGTCGTATACTGACCATCTGGAATCTCATCAAACTGATAAAGTATATTTGTGCCCAGAGTGTAACATGTCGTTTAAAGTAAAGAAGTATTTGATAAGTCATATGCAGATTCACAATGAAGATTACCCCTACAAATGCCAGTTGTGTCCTCAAAAATTCAagcaaaaaaccaatttggaaATTCATATTAAacgaattcataaaaaaaaatgtccaaCTTGCGGCTTGGTATTTACTGATATAAAGTCATTCAATGAGCATGTTGAAACCCATTTAGAGAATTGTTACAAATGCCCAGTATGTAATCATGTGGTAAAATTGAAGAAATCGATGcaaaaacatattaaacagAAACATTCCcatttgaatataaatttaaaagatctCGATAATAAAGCCAATGAACATGTAAGTAATAAAGAAGAAAAGAAGTGTAATAATATTGAAAGTATGGAAATTCAAACTGATATTGATGATGCTCttggtaataaaaatgataattgtGGAGAGTTCGATAAACTTCTAGATTTGAAGGAGGCAGAACTGGGTGTTGAGGATATTTACACAAATCTGGATTATATTGTAAATTCTTACGATGAAAATACCAACATTCCTTTAAATCCACAAGGAAGAATACCTTCTACTGAAAACATGGAAGATAATATTCTAGATTTTAACAGATGTTTAGAAATAGACTTCGCTAATTCTAATAatcaagaaatttattaa
- Protein Sequence
- MNTENRRINRKSAVLGNIPSGNEKSKRRGLGSNSRTINICGICGLNHVANKCEIVEIKYHVKDTPVLSKARLSLPKSLELQSMVGGVLSVTAKEYIDSGTKFGPFEAKKVFTPDLNINFSLKIFQTEELFQQLYLNNSNEDECNWMFFVQPAESKCDQNLVCYQEGAKIYFTSIRDILRGEHLKVWYSPYYAGKMDKPLLSEDKENYLREDVVNLDIDLEKPQQNDSDETVYKCKFCNLEEINSVIFAKHLKNHYTMQMYKSCEKCNKKFRTKQSLKKHMEVVHWVKESRNNNNDKDPCRNDNTQEGLGGPLLNNEYLNMENNLLDDEINENFSLENPSINLENDFNLNINENYNLSFNFLESNDSYFCDICLKSFSGLKCLIMHLAIHTEEYTCSKCKKAFSRKESLENHTICNPERFGTFKCNDCDKTFITRRNLTSHVRQRHNDYNVLCKSGCKKKFSTEEAANKHKCPLKLNLSCNICDKKFNTQKYLRRHMIIHSNSGTKNQHLCEICSSTFSSSKLLYQHQLSHRDNKLFTCNICDKSFKWRSSYTDHLESHQTDKVYLCPECNMSFKVKKYLISHMQIHNEDYPYKCQLCPQKFKQKTNLEIHIKRIHKKKCPTCGLVFTDIKSFNEHVETHLENCYKCPVCNHVVKLKKSMQKHIKQKHSHLNINLKDLDNKANEHVSNKEEKKCNNIESMEIQTDIDDALGNKNDNCGEFDKLLDLKEAELGVEDIYTNLDYIVNSYDENTNIPLNPQGRIPSTENMEDNILDFNRCLEIDFANSNNQEIY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -