Basic Information

Insect: Stenus bimaculatus
Gene Symbol: -
Assembly: GCA_963971135.1
Location: OZ020181.1:53820576-53823751[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 13 4.7e-05 0.0071 18.1 1.4 2 23 211 232 210 232 0.96

2 13 9.9e-06 0.0015 20.2 1.3 1 23 238 260 238 260 0.97

3 13 0.0013 0.19 13.5 4.7 1 22 265 286 265 289 0.90

4 13 0.32 48 6.0 0.1 4 16 329 341 328 343 0.91

5 13 0.00029 0.044 15.6 1.5 1 22 353 374 353 377 0.90

6 13 0.014 2 10.3 2.3 3 19 386 402 385 402 0.97

7 13 3.8e-05 0.0057 18.4 0.3 1 23 439 461 439 461 0.96

8 13 1.4e-05 0.0022 19.7 2.9 1 23 467 489 467 489 0.99

9 13 8.9e-07 0.00013 23.5 2.0 1 23 495 517 495 517 0.99

10 13 1.5e-05 0.0022 19.6 3.7 1 23 525 547 525 547 0.98

11 13 0.00013 0.019 16.7 4.3 1 23 553 575 553 575 0.99

12 13 0.00038 0.057 15.2 0.2 1 23 581 603 581 603 0.97

13 13 1.2e-05 0.0019 19.9 3.8 1 23 609 631 609 631 0.99

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	13	4.7e-05	0.0071	18.1	1.4	2	23	211	232	210	232	0.96
2	13	9.9e-06	0.0015	20.2	1.3	1	23	238	260	238	260	0.97
3	13	0.0013	0.19	13.5	4.7	1	22	265	286	265	289	0.90
4	13	0.32	48	6.0	0.1	4	16	329	341	328	343	0.91
5	13	0.00029	0.044	15.6	1.5	1	22	353	374	353	377	0.90
6	13	0.014	2	10.3	2.3	3	19	386	402	385	402	0.97
7	13	3.8e-05	0.0057	18.4	0.3	1	23	439	461	439	461	0.96
8	13	1.4e-05	0.0022	19.7	2.9	1	23	467	489	467	489	0.99
9	13	8.9e-07	0.00013	23.5	2.0	1	23	495	517	495	517	0.99
10	13	1.5e-05	0.0022	19.6	3.7	1	23	525	547	525	547	0.98
11	13	0.00013	0.019	16.7	4.3	1	23	553	575	553	575	0.99
12	13	0.00038	0.057	15.2	0.2	1	23	581	603	581	603	0.97
13	13	1.2e-05	0.0019	19.9	3.8	1	23	609	631	609	631	0.99

Sequence Information

Coding Sequence: ATGAATGTTTCATGTAGGGCGTGTTTATCCGAAGAAGTTCTCTTATACACCAATGAAGAAACTGAAACAAATGGAATTTTTTCGGGATTGTTGGAAACTTTCAAGGCTCTAACAGGCTTCgatactCATCCTATCTACCTCGGAggtgtttttaatttatgtaaaccCTGCGAAGAGAAGCTAAAACTTTGTTATGAATTTCGTGAATTGTGTTTACAATCGTATTCTAAACTAGAGATAGaatttataaaagtagaagtaGATCAAGGTGAGGAGGTTCCTGTTGAAGATTATAGTGATTTTGATTTGATTGGTGATGATGACGAAATCGAAACGGTTGAAAATTATGATTctcaaattgaaaaatgtgaagATAAAGATTTgagtgtaaataaaaataaacgctTGGAAGTATTTTCGGAAGAAACCGTTCAGAATTTAATAGATGAAGCATTTACTATGTCAAACGAATTAAATAAGTGCGTTAGCTGTGATTTTATTGCTGAAAAATTTGTATATCTTCGTCCTCATATGGTTGAGGATCATCCAGACATTAAAGATAATTGGTGTAATAAATGCAATCAACTTGTTGACCCTTTAAAAGAGCATATACACAGGAAAAATATGTTAACGTGTAAATTATGTGGTAAAAATGTAGATAACCGTTCACACCTTATAAACCATTATCGCGCACATACagATACTCGAAAATTCAATTGTGATCAATGCGATAAATCGTACACTACGAAAAGTGGTTTGGATGTTCATTATAAATCGCATGACAATGCAACGTACAATTGCAAATTTTGTAATAGCTCCTACAAACATCCAAGTTCCTTACGCAAGcatttacttaaaacaaaacactATCGGGGAGACTTACAAAACGGTTGTAAAACTGTAAACTTTGACAACCCAGAAGTAGTAAATTCAAATGAAGTATTTGAAAATGCAATGGAaacagaAACTTCGAGtgatttcaaaaatgattgcGAGAAATCGTATACTTCAAGCAGTCATTTAGATGTGAATTATAAATCGCATAAGAATGAAACttataattgcaaattttgTCCTAATAGTTACTCACATCCGGCTTCTTTACGACGTCATTTACTTAAAGCCAATCATTCTGACGAGGAGGTACAAGTAGATTGTAAAGcgtgcaataaaaaatttaaaaaccatgAGGATTTAGAGAAGCATGACTGCATTAATCAAGCTGAAAATTCTAATAATGTGCCTGAATTTGTTGCAGTAAAAACGGAAACTTCGAGTGATTCAAATTTagataaatcacaaaaaatcaaaaagtatttATGTAATGTTTGTGGGAACCAATTTAgAAAAGCTTCGGGATTAAAACAGCATATGGAAATCCATGCAGGGGTAAAACCGTTTAAATGCCAGTACTGTGGTTACAGAACACGTTTAAAGTCTTTACTAAAAAATCATGTACGAACACACACGGGAGAAAAACCATATAAATGTAACGTTTGTCTAAAAACCTTTAGTCAACGCAGCAGCTTAAACTTACATGTTAAAACCCACCAAGGAGACTTAGGAAAACCATACGCTTGTAAACTTTGCGAAAAACGATTTTGTCGGAAAATTGATCTTCAATATCATATGCGCCTACATACAGGAGAGAAACCTTATCGTTGTATGCATTGCCCAATGGCTTTTAATCaaagttgtaatttaaaatatcatattGAGACTCATAGTGATGTACGACCATATATTTGTGGTTATTGTGGTAGCGGTTTTAAAGCAAAATCAACTTTAAAGAATCATGAACTTATACATACAGgAGAAAAACCTTACAAATGCAATATTTGTAGTATTAGTTTTCGTAAAATGAATCACCTCACAGTTCACATGAAACGACACAAGaaataa
Protein Sequence: MNVSCRACLSEEVLLYTNEETETNGIFSGLLETFKALTGFDTHPIYLGGVFNLCKPCEEKLKLCYEFRELCLQSYSKLEIEFIKVEVDQGEEVPVEDYSDFDLIGDDDEIETVENYDSQIEKCEDKDLSVNKNKRLEVFSEETVQNLIDEAFTMSNELNKCVSCDFIAEKFVYLRPHMVEDHPDIKDNWCNKCNQLVDPLKEHIHRKNMLTCKLCGKNVDNRSHLINHYRAHTDTRKFNCDQCDKSYTTKSGLDVHYKSHDNATYNCKFCNSSYKHPSSLRKHLLKTKHYRGDLQNGCKTVNFDNPEVVNSNEVFENAMETETSSDFKNDCEKSYTSSSHLDVNYKSHKNETYNCKFCPNSYSHPASLRRHLLKANHSDEEVQVDCKACNKKFKNHEDLEKHDCINQAENSNNVPEFVAVKTETSSDSNLDKSQKIKKYLCNVCGNQFRKASGLKQHMEIHAGVKPFKCQYCGYRTRLKSLLKNHVRTHTGEKPYKCNVCLKTFSQRSSLNLHVKTHQGDLGKPYACKLCEKRFCRKIDLQYHMRLHTGEKPYRCMHCPMAFNQSCNLKYHIETHSDVRPYICGYCGSGFKAKSTLKNHELIHTGEKPYKCNICSISFRKMNHLTVHMKRHKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -