Sbim036727.1
Basic Information
- Insect
- Stenus bimaculatus
- Gene Symbol
- -
- Assembly
- GCA_963971135.1
- Location
- OZ020185.1:23558288-23565524[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.003 0.45 12.4 0.7 2 23 172 194 171 194 0.93 2 19 8.1 1.2e+03 1.6 4.9 1 23 382 405 382 405 0.91 3 19 1.5e-05 0.0022 19.7 1.8 2 23 562 584 561 584 0.95 4 19 0.0005 0.075 14.8 1.0 2 23 599 620 598 620 0.97 5 19 0.0046 0.7 11.8 0.6 2 23 629 651 628 651 0.96 6 19 6.3e-05 0.0094 17.7 0.2 1 23 666 689 666 689 0.94 7 19 0.0016 0.24 13.2 5.7 1 23 691 713 691 713 0.98 8 19 0.0003 0.045 15.5 0.8 3 23 735 755 734 755 0.97 9 19 0.0033 0.49 12.3 0.1 1 23 773 796 773 796 0.96 10 19 0.0084 1.3 11.0 0.1 3 23 809 829 808 829 0.98 11 19 0.0002 0.031 16.1 7.4 1 21 856 876 856 878 0.95 12 19 0.1 15 7.6 1.5 3 23 900 920 898 920 0.97 13 19 0.029 4.3 9.3 0.0 3 23 944 965 942 965 0.94 14 19 0.0019 0.29 13.0 0.1 1 23 981 1005 981 1005 0.93 15 19 0.058 8.7 8.3 0.2 1 23 1035 1058 1035 1058 0.95 16 19 0.27 40 6.2 2.4 1 19 1067 1085 1067 1089 0.95 17 19 3.6e-06 0.00054 21.6 0.7 3 23 1100 1121 1098 1121 0.95 18 19 9.2e-06 0.0014 20.3 0.5 1 23 1130 1152 1130 1152 0.98 19 19 0.0014 0.2 13.5 0.4 1 23 1177 1200 1177 1200 0.97
Sequence Information
- Coding Sequence
- ATGGCCGAGGCTAGGATAGGAAATTACAGTTCGTGTTGTCGGCTTTGCCTGACCGAACAGTACAATTCCTTGAACAACATTTTCACGGGATATTCCAATGGCGACGCCTTGGTGGAAAAAATTTGTTCTTATCTAGGAGTGCAGataaatacAACCGATAAATTATCGACCATGCTCTGTGAAACCTGTTTTGGCACTCTTACTAAATGGGAGGGTTTCCGAAAAAAGTGCATAGAAAACCAAATCAAAATCCAAAAATGGCTTGATAATTGGAACGAGAATACGgccACTGTAGTGAAAGATGAGCCTGTTGAAGAATTATCAAATGACATAATAAATTTGGATGATGATGAAGctgttGTTAGCATCAAACCTGAACCTATTGATTTAAATGATGAATACACTGAAGTCCCTCCAATTTTACCACAAATGGTTGAAACCATTTTGGAAAATGGTGATTCGTCAACCAATGAAGaGACATATGCCTTAAAAAGATATTCCGAATTATCTACTCAATGTTCTGTTTGTGACAAAGTTCTAAGTAATCCAGGCAACCGAAAAAAGCATGAGAAATTTATGCATGGAATGTATGGTGGTATTAAAAAGCGATCTTCTCTTGGTGTTCCTGTAgttaataaagGAGGTCTTGAGATTAAATCCGTTTATCCTCAAGCATCATCGACTTCTAAAATATCACCGGTAATCTCCCACATATCCTCGAATGCGCCAAGCAAAACTCCACCACCTGCGCCTCAAAATGGTCAAGCGACcgaaaaagaaaaaatccaatttgcAGCAGGTTTGCAATTGCAATCAATTTCTGATCCTATGAAATATccgaatttaacaaaaatagaaGTTGGTTATCttgataaatgtaaaataatggttacaatgtttataaaaaatatgtgcaCCTGCCATAGCCAGAAACATCCGAGTCAGAAGAAAATGCTGTGTCATATGCGTCAGGTAGTTCCATGGTTTCCGCCTTATACTTGCTTCAACTGCATGGCGACATACGACGGTCGTTCCATGAAGATGAGACATACACCTCGATGCCCAAGACAAACCTACGAATACCTTATTAGAATAGCTGAATTAAAAGATAGACCTGATTCGAAATTTAGATTGTATCAGAGCCACAAGTGTGTtaaatgcaattatttttataacttctaCGAAGATTATTGTGATCACGTAGATAATGTACACGTGCTTGAAGAAGGACCTTATAATTGTTTGTGttctgaaaattttgaaagtctCGATTCCTTCCGCGAGCATGTCCACAAAAATTGCTTCCTGCAGTATTATTGCGATATTTGCTTCTTTTTATGTCCTACACTTGATGATTTTAAAGAACACTGCACCAATTTCCACGATAATCAAGAGAATTTCCAATTCTTCAATCTACACCCAAACTTTGAAGTTTTGAGTGACAAAGAAATAACTGAAATTGCTGTACGTAATCGTAAAGATATGGAGCTTGATTTTGTTGAGCAAAATTTAACAGAAGCTGATACCAGTCAAGAAGTTGAAACGCCAGTTTTAAGTAGAAGCATGAGGAAAAGAAGGAAAATCGAACCTGTTGATCTACCACAACTCGAACCCGTAGATGTTACAGAAAATATGAAATCGTCACGTGCTAATAACTCTAACGGGTATAAGTATAAGCCAACCAAATGTACAGAGTGCGATAAGGTTTATTCCAGCTGGCATAACATGATTCGACACTTGAAAGGTTTTCATGGTGTTGAAGAACCACCATCTCCACAAGCTGCGGTTTGCACAACTTGCGATATTTGTGGAAGTgaatttacaaattattataatatgttgCGCCATCGAAAACTCCACGATGAAGATTCGAAAAAGATAATAACTTGCCCGCAATGTCCAGATAGGTTTAGGCTAAATTCCGAATTAAAAGATCATATTCATAGGGTTCATGCAGATTTATTGAATTCAAATGTAAGAAGTGTACGTTCAACATTCAAATGTGATGATTGTGGGCTTTCATTTAAAAGTGTGCAATTGCTTGAAACGCATCAAGAAGAAGCCCATCCGTTTACTTGCCATGAATGTGGTAAACAATGCAATAGTACGGAAGAATTGGAGCATCATAGAAGTGTGCATTTGAATATTACCTTAACTCGTGATCCAGACACAAAACGTTATCGTAGTGTTACCAACAACATGTGTCAAATTTGTGATAAAACCTTTGAGACTGATGTGGAATTGCATGAGCATATGCAGTTACACGAAGACATGCCTACATTAGATATGGAAGGGGACGTTAAGAATGTAAGGACTTATCAGTGTGTTGAATGCGATAAAGTTTACGCCGGCGCTAGAGGGTTATGGGTACATAATAAAAGATTTCACCCGGAACGAAGCACCAAAAATATGTTTCCTAAAGATTGTCCGATTTGCGATAGAACGCTTACTACGATGGCAGCTTGGGTGATGCACAAGAGAACTCATGATAAAACTTcaaagaaaatgtttaatttaccACCGAGTTCTTTGATGTACCAGGAAAGTGAACGTGATGAAGATTATCATACCTGCAAGAAATGCTTTAAAGTTTTCGCAAGTAAATCAAATCTTAAAACCCACATGAAATGCCATGGTATTAATTTACCTTCTCCTCGCTCGTATTTAAAAACGGGAAAATTTGTCAAGACGTTTTGGTGCGATATTTGCCACCAGGCTTGTGCAGGAATGGCTAATTTGAATAAGCATAAAATGGAGCATCGAATTGAGGATAATCCTGATATGGAAAACAATGTGAAGGTCGAGGTGAAAAATAGAAAACCTGTTATTTGTAGGTACTGCAAGCTTGCTTTTGATTCTCCTGAAATGTTGGGCGAACACATGATAAACGAGCATGTTGAAGAACCTAAGCCTAAAGCTTTTAGGATGGTGAAAGGAAAGTATGCTTGTGAGGTTTCAAACTGTGGTAAATTATTTTCCTCGGCTTCGGCTTTAAGTTCCCATCAGGGCTGGCATAAGCGGCATAGAgttgaaaatgttttaaaaatggaCGAGAGGAAGTATCAAAAGAAAGTTGAAGTAAAGCAAGAGCCTGTTGTTATGTACAAGTGTAAGACTTGTATAGCGAGTTTTGCAAGCGATACTCAACTTCAAATGCATATATTGGAAGCGCATCGGAAAATTGATGCAACTCTTTCCTATAAATGCTACAAGTGTAATTTGGATTTTACTTCTCATGCGGAATTTGTCAGCCATGATGCTTATCACAAGCAGAAGGAAAATAAAAAGGGagttatttgtaaatattgccaGAAGGTGTTTAGCCGTAGTGATTATTTGAATATTCATATCAGTAAAAAACACCCGGAATATGCAGTTGTTGGAACTTTCAAATGCAATCTATGTGATCGAGtgtttgaaaaacaaaatgcGCTAAATATTCATCTTAAAGTACACGAGCGTGTAAAGTCAAAACCACCCGCTACAGGGCCTGCAGCACCTCCACCTACAACttcaaaaactttcaaatattcTTGCTCTATTTGTCATCTTGGATTTGATATTCCCAAGGAGTTACGCAATCACATTATTTCCACCCATCCTTTCTGA
- Protein Sequence
- MAEARIGNYSSCCRLCLTEQYNSLNNIFTGYSNGDALVEKICSYLGVQINTTDKLSTMLCETCFGTLTKWEGFRKKCIENQIKIQKWLDNWNENTATVVKDEPVEELSNDIINLDDDEAVVSIKPEPIDLNDEYTEVPPILPQMVETILENGDSSTNEETYALKRYSELSTQCSVCDKVLSNPGNRKKHEKFMHGMYGGIKKRSSLGVPVVNKGGLEIKSVYPQASSTSKISPVISHISSNAPSKTPPPAPQNGQATEKEKIQFAAGLQLQSISDPMKYPNLTKIEVGYLDKCKIMVTMFIKNMCTCHSQKHPSQKKMLCHMRQVVPWFPPYTCFNCMATYDGRSMKMRHTPRCPRQTYEYLIRIAELKDRPDSKFRLYQSHKCVKCNYFYNFYEDYCDHVDNVHVLEEGPYNCLCSENFESLDSFREHVHKNCFLQYYCDICFFLCPTLDDFKEHCTNFHDNQENFQFFNLHPNFEVLSDKEITEIAVRNRKDMELDFVEQNLTEADTSQEVETPVLSRSMRKRRKIEPVDLPQLEPVDVTENMKSSRANNSNGYKYKPTKCTECDKVYSSWHNMIRHLKGFHGVEEPPSPQAAVCTTCDICGSEFTNYYNMLRHRKLHDEDSKKIITCPQCPDRFRLNSELKDHIHRVHADLLNSNVRSVRSTFKCDDCGLSFKSVQLLETHQEEAHPFTCHECGKQCNSTEELEHHRSVHLNITLTRDPDTKRYRSVTNNMCQICDKTFETDVELHEHMQLHEDMPTLDMEGDVKNVRTYQCVECDKVYAGARGLWVHNKRFHPERSTKNMFPKDCPICDRTLTTMAAWVMHKRTHDKTSKKMFNLPPSSLMYQESERDEDYHTCKKCFKVFASKSNLKTHMKCHGINLPSPRSYLKTGKFVKTFWCDICHQACAGMANLNKHKMEHRIEDNPDMENNVKVEVKNRKPVICRYCKLAFDSPEMLGEHMINEHVEEPKPKAFRMVKGKYACEVSNCGKLFSSASALSSHQGWHKRHRVENVLKMDERKYQKKVEVKQEPVVMYKCKTCIASFASDTQLQMHILEAHRKIDATLSYKCYKCNLDFTSHAEFVSHDAYHKQKENKKGVICKYCQKVFSRSDYLNIHISKKHPEYAVVGTFKCNLCDRVFEKQNALNIHLKVHERVKSKPPATGPAAPPPTTSKTFKYSCSICHLGFDIPKELRNHIISTHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -